Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0138 ATGATTAAGGGCTTTCTTCACCAACTTCAGCTTTCTTCTCCTTCAACCGAGATGGAAGTGCAAGATCATGGTCACATAATTGAAGTGTGTGGAGATGTGCAAGCTGTAGGGCCTAGCACTGTGGGAAGTAAAATTTGTGGGGATGCACCCTCTTGTGGATTTTCTGATGCAAAAAGCAGTTCAAAAGATGCAAAGGAGCGATCTGCGTCTATGCGGAAGCTTTGCATAGCAGTTGTTCTCTGCATCGTTTTTATGAGTGTAGAAGTAGTCGGAGGTATTAAAGCAAACAGTCTTGCAATATTGACTGATGCTGCTCATTTGTTGTCAGATGTTGCTGCTTTTGCCATTTCTTTATTCTCACTCTGGGCCTCTGGTTGGGAGGCAACTCCACGTCAGTCATATGGTTTCTTCCGCATTGAAATACTCGGTGCTCTTGTTTCCATTCAGATGATCTGGCTTCTAGCTGGAATTCTTGTTTACGAAGCTATCGTCCGACTTATAAATGGTCCGGGAGAAGTCAAGGGGTTGCTCATGTTTGCTGTTTCGACATTTGGGTTAGTTGTTAACATAGCTATGGCTCTGCTGCTTGGTCACGAACATGGTCATGCCCATTCTCATGGTCACAGTCATGGACATGGTGAGCATGGCCATGGTCATGGCGGCCATGAACATGGTGATGAAGATCATAGGCATCATCATGGAATAAGTGTGACCACCCACCATCACCACCACCATCACCACCACCACCATGGAGAAGAGAAGGGAGCTGGCAGCAAAGGTGTTGAGCAGGAGCAGCAGCAGCAGCAGCAGCAGCATGACCACAAGGAATCAGTAGCCACACCCTTGCTTGAGAGTTGTGTTGACGACGGAAATCCTTCACGAAAGGTTACCAAGATGCAAAAGAAACAACGAAACATAAACGTACAGGGGGCTTATCTTCATGTACTTGGAGATTCCATCCAAAGCATCGGGGTAATGATCGGCGGGGCAATCATATGGTATAAACCGGAATACAAGATTCTTGATCTGATATGCACCCTTATTTTCTCTGCAATTGTGCTGTGCACAACAATTCAAATGCTTCGAAATATCCTCGAGGTTTTGATGGAGAGCACGCCGCGAGAGGTGGACGCAACAAAGCTTGAGAAGGGTTTGTGCGAGATGGAGGAGGTAGTTGCAATCCATGAACTGCACATATGGGCCATAACTGTTGGGAAGATTCTATTGGCATGCCATGTTATAATAAAGCCAGAGGCAAATGCCGACATGGTATTGGACAAGGTTATTGATTGTGTAGGTGTTGAGATTGATGGTCATCTTGATGTGCATCACATTTTGGTAGAGGATTCCCACAGAGTCCAAGGTTTCCAAAGTAGGAAGAATTCTCAAAAGTTTCAAATTGTTTGCCTTGAGGAATTGGTCATGACAGCTGATTTTGTGAGAGATTCAAAAGTGAGAGAAATGTAA 1467 45.13 MIKGFLHQLQLSSPSTEMEVQDHGHIIEVCGDVQAVGPSTVGSKICGDAPSCGFSDAKSSSKDAKERSASMRKLCIAVVLCIVFMSVEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWASGWEATPRQSYGFFRIEILGALVSIQMIWLLAGILVYEAIVRLINGPGEVKGLLMFAVSTFGLVVNIAMALLLGHEHGHAHSHGHSHGHGEHGHGHGGHEHGDEDHRHHHGISVTTHHHHHHHHHHHGEEKGAGSKGVEQEQQQQQQQHDHKESVATPLLESCVDDGNPSRKVTKMQKKQRNINVQGAYLHVLGDSIQSIGVMIGGAIIWYKPEYKILDLICTLIFSAIVLCTTIQMLRNILEVLMESTPREVDATKLEKGLCEMEEVVAIHELHIWAITVGKILLACHVIIKPEANADMVLDKVIDCVGVEIDGHLDVHHILVEDSHRVQGFQSRKNSQKFQIVCLEELVMTADFVRDSKVREM 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3304388 3311820 + CaPI482276_06g001380.1 Cam06g0138 128438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0138 488 MobiDBLite consensus disorder prediction 260 276 - -
Cam06g0138 488 MobiDBLite consensus disorder prediction 201 278 - -
Cam06g0138 488 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 40 435 IPR050681 GO:0005385(PANTHER)|GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0071577(PANTHER)
Cam06g0138 488 MobiDBLite consensus disorder prediction 214 234 - -
Cam06g0138 488 MobiDBLite consensus disorder prediction 235 252 - -
Cam06g0138 488 NCBIfam cation diffusion facilitator family transporter 71 445 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam06g0138 488 Gene3D Cation efflux protein transmembrane domain 70 368 IPR027469 -
Cam06g0138 488 Pfam Cation efflux family 75 369 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam06g0138 488 SUPERFAMILY Cation efflux protein transmembrane domain-like 68 370 IPR027469 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0116 Cam-Chr3:2089928 Cam06g0138 Cam-Chr6:3304388 3.20E-67 dispersed
Cam06g0138 Cam-Chr6:3304388 Cam10g1217 Cam-Chr10:25541500 9.00E-11 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0138 K14689 - csv:101213602 603.594