Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0176 ATGTTCAGAGAAGTAGAAGCAGCTCAAGTTCCCGCCCGCTTCACTGAGCTTTTCACTTTTGGGACAAAATATAACTTGAAAAACATAGAGGTGAATGTTAAGTCAGGAGCTTCGAGAAATTCAATCGGTTGGAATTTCGGCGTCCACGTCAGACGATCTACACTCTCCATCGCCCTCACTCTCAGTTTTCAAGCATTGCAGTTGAAGATGCCATCGGCTCAAGATCCGTTCTATGTTGTAAAAGACGAGATTCAAGAATCTATTGATAAACTGCAATCCAGCTTTCACCAATGGGAAAGGATATCTTCTGATTCAGGAGAGAGAATACAACAAACAAAAGAGTTGCTTGCTTCTTGTGAAAGCATTGAATGGCAGGTGGACGAGTTGGACAAAGCTATTGCTGTGGCAGCTAGAGATCCATCTTGGTATGGCATTGATGATGCAGAACTTGAAAAACGAAGGAGATGGACGAGTACTGCTAGAACACAGGTTGGAAATGTTAAGAAAGTAGTAGGAGCTGGGAAGGAGCAAACAGGAACTGCTAGTGCAAGTGGGATGCGTCGAGAATTGATGAGACTACCTAATGCACATGAAACAGACAGATCAAACTTATATACAGCCAACCAAGCAAATGATGACTTCATCACATCCGAATCAGATAGACAGCTGCTTCTAATAAAGCAGCAGGACGAGGAGTTGGATGAGTTGAGTGCAAGCGTGGAGAGAATTGGAGGTGTTGGGCTTACAATACACGAAGAGCTCCTTGCACAGGATAAAATTATCGACGACCTAGGAATGGAAATGGACAGTACATCAAATCGTCTTGATTTTGTTCAGAAAAAAGTAGCAGTGGTCATGAAGAAGGCCAGCGCCAAGGGGCAGATAATGATGATATTGTTCTTGGTGGCTTTGTTCATCATCCTTTTTGTGTTGGTGTTCCTCACCTAG 948 43.35 MFREVEAAQVPARFTELFTFGTKYNLKNIEVNVKSGASRNSIGWNFGVHVRRSTLSIALTLSFQALQLKMPSAQDPFYVVKDEIQESIDKLQSSFHQWERISSDSGERIQQTKELLASCESIEWQVDELDKAIAVAARDPSWYGIDDAELEKRRRWTSTARTQVGNVKKVVGAGKEQTGTASASGMRRELMRLPNAHETDRSNLYTANQANDDFITSESDRQLLLIKQQDEELDELSASVERIGGVGLTIHEELLAQDKIIDDLGMEMDSTSNRLDFVQKKVAVVMKKASAKGQIMMILFLVALFIILFVLVFLT 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3639170 3645398 + CaPI482276_06g001760.1 Cam06g0176 128476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0176 315 PANTHER SYNTAXIN 77 302 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cam06g0176 315 SUPERFAMILY SNARE fusion complex 222 285 - -
Cam06g0176 315 ProSitePatterns Syntaxin / epimorphin family signature. 229 268 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cam06g0176 315 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 223 285 IPR000727 -
Cam06g0176 315 FunFam Syntaxin 10 72 174 - -
Cam06g0176 315 Gene3D - 71 173 - -
Cam06g0176 315 Pfam Syntaxin 6, N-terminal 75 168 IPR015260 GO:0016020(InterPro)|GO:0048193(InterPro)
Cam06g0176 315 Gene3D - 230 294 - -
Cam06g0176 315 SMART tSNARE_6 218 285 IPR000727 -
Cam06g0176 315 FunFam syntaxin-61 isoform X1 226 287 - -
Cam06g0176 315 Pfam SNARE domain 260 311 IPR000727 -
Cam06g0176 315 SUPERFAMILY t-snare proteins 74 169 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cam06g0176 315 CDD SNARE_Qc 226 283 - -
Cam06g0176 315 CDD SNARE_NTD_AtSYP61-like 74 171 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0176 Cam-Chr6:3639170 Cam10g0445 Cam-Chr10:6854202 5.70E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0176 K08500 - csv:101212527 420.624