Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam06g0176 | ATGTTCAGAGAAGTAGAAGCAGCTCAAGTTCCCGCCCGCTTCACTGAGCTTTTCACTTTTGGGACAAAATATAACTTGAAAAACATAGAGGTGAATGTTAAGTCAGGAGCTTCGAGAAATTCAATCGGTTGGAATTTCGGCGTCCACGTCAGACGATCTACACTCTCCATCGCCCTCACTCTCAGTTTTCAAGCATTGCAGTTGAAGATGCCATCGGCTCAAGATCCGTTCTATGTTGTAAAAGACGAGATTCAAGAATCTATTGATAAACTGCAATCCAGCTTTCACCAATGGGAAAGGATATCTTCTGATTCAGGAGAGAGAATACAACAAACAAAAGAGTTGCTTGCTTCTTGTGAAAGCATTGAATGGCAGGTGGACGAGTTGGACAAAGCTATTGCTGTGGCAGCTAGAGATCCATCTTGGTATGGCATTGATGATGCAGAACTTGAAAAACGAAGGAGATGGACGAGTACTGCTAGAACACAGGTTGGAAATGTTAAGAAAGTAGTAGGAGCTGGGAAGGAGCAAACAGGAACTGCTAGTGCAAGTGGGATGCGTCGAGAATTGATGAGACTACCTAATGCACATGAAACAGACAGATCAAACTTATATACAGCCAACCAAGCAAATGATGACTTCATCACATCCGAATCAGATAGACAGCTGCTTCTAATAAAGCAGCAGGACGAGGAGTTGGATGAGTTGAGTGCAAGCGTGGAGAGAATTGGAGGTGTTGGGCTTACAATACACGAAGAGCTCCTTGCACAGGATAAAATTATCGACGACCTAGGAATGGAAATGGACAGTACATCAAATCGTCTTGATTTTGTTCAGAAAAAAGTAGCAGTGGTCATGAAGAAGGCCAGCGCCAAGGGGCAGATAATGATGATATTGTTCTTGGTGGCTTTGTTCATCATCCTTTTTGTGTTGGTGTTCCTCACCTAG | 948 | 43.35 | MFREVEAAQVPARFTELFTFGTKYNLKNIEVNVKSGASRNSIGWNFGVHVRRSTLSIALTLSFQALQLKMPSAQDPFYVVKDEIQESIDKLQSSFHQWERISSDSGERIQQTKELLASCESIEWQVDELDKAIAVAARDPSWYGIDDAELEKRRRWTSTARTQVGNVKKVVGAGKEQTGTASASGMRRELMRLPNAHETDRSNLYTANQANDDFITSESDRQLLLIKQQDEELDELSASVERIGGVGLTIHEELLAQDKIIDDLGMEMDSTSNRLDFVQKKVAVVMKKASAKGQIMMILFLVALFIILFVLVFLT | 315 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 3639170 | 3645398 | + | CaPI482276_06g001760.1 | Cam06g0176 | 128476 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam06g0176 | 315 | PANTHER | SYNTAXIN | 77 | 302 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Cam06g0176 | 315 | SUPERFAMILY | SNARE fusion complex | 222 | 285 | - | - | |
Cam06g0176 | 315 | ProSitePatterns | Syntaxin / epimorphin family signature. | 229 | 268 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Cam06g0176 | 315 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 223 | 285 | IPR000727 | - | |
Cam06g0176 | 315 | FunFam | Syntaxin 10 | 72 | 174 | - | - | |
Cam06g0176 | 315 | Gene3D | - | 71 | 173 | - | - | |
Cam06g0176 | 315 | Pfam | Syntaxin 6, N-terminal | 75 | 168 | IPR015260 | GO:0016020(InterPro)|GO:0048193(InterPro) | |
Cam06g0176 | 315 | Gene3D | - | 230 | 294 | - | - | |
Cam06g0176 | 315 | SMART | tSNARE_6 | 218 | 285 | IPR000727 | - | |
Cam06g0176 | 315 | FunFam | syntaxin-61 isoform X1 | 226 | 287 | - | - | |
Cam06g0176 | 315 | Pfam | SNARE domain | 260 | 311 | IPR000727 | - | |
Cam06g0176 | 315 | SUPERFAMILY | t-snare proteins | 74 | 169 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Cam06g0176 | 315 | CDD | SNARE_Qc | 226 | 283 | - | - | |
Cam06g0176 | 315 | CDD | SNARE_NTD_AtSYP61-like | 74 | 171 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam06g0176 | Cam-Chr6:3639170 | Cam10g0445 | Cam-Chr10:6854202 | 5.70E-06 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam06g0176 | K08500 | - | csv:101212527 | 420.624 |