Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0181 ATGAAGTTGAGAGCCCAGCCTTTGGAGAGATGGAAGGGACATGTATTCCCAAATCCTAACATTGAAGATCTACACTCTCCGTCGCCTTCACTCTCAGGTCCCAATTTGCTGGAGTCTTTCGCGAGCAGTCAAATGGATGGACCAACTGGTCGCAGTGGCGGTGGCATGGATATGAATTTACCGAACTATAAGCTTGGGAAAACCCTTGGCATTGGTTCATTTGGGAAAGTGAAAATTGCAGAGCATGCTTTAACTGGTCATAAAGTTGCTATTAAGATCCTTAACCGCCGAAAGATAAAAAACTTGGACATGGAAGAAAAAGTGAGAAGAGAGATTAAAATATTGAGACTGTTCATGCATCCGCACATTATACGGCTCTATGAGGTTATAGAGACCCCAGCAGACATTTATGTTGTGATGGAGTATGTAAAATCTGGGGAGCTCTTTGACTATATTGTAGAAAAGGGAAGGTTGCAGGAGGATGAAGCCCGTAATTTTTTCCAACAGATTATCTCTGGTGTGGAGTACTGCCACAGGAATATGGTAGTTCACAGAGATCTCAAGCCGGAGAACTTGCTTCTTGACTCCAAATGTAATGTGAAGATTGCTGATTTTGGTTTGAGCAATATAATGCGTGATGGTCACTTTCTGAAGACAAGTTGTGGGAGTCCCAATTATGCTGCCCCAGAGGTCATCTCTGGGAAATTATACGCTGGACCTGAAGTAGATGTGTGGAGTTGTGGTGTGATTTTGTATGCTCTTCTATGTGGCACTCTTCCTTTTGACGATGAAAACATTCCCAACCTGTTTAAGAAAATAAAGGGTGGAATCTATACTCTTCCAAGTCATTTATCATCTGGTGCTAGAGAACTGATTCCTAGCATGCTGGTGGTTGACCCAATGAAACGCATCACGATCCCTGAGATTCGGCAGCACCCATGGTTTCAGGCTCATCTTCCACGCTATTTAGCCGTGCCTCCACCTGATACAATGCAACAGGCAAAAAAGATTGATGAAGACATTCTTCAGGAAGTTGTAAAGATGGGATTTGACAGGAATCAACTGGTGGAGTCTCTTCGTAACCGTATTCAAAATGAGGCTACTGTTGCTTATTATTTGTTGCTGGACAACCGGTTCCGTGTTTCTAGTGGCTATCTTGGAGCTGAGTTTCAGGAGACTATGGAAACAGGATTCAACCATATGCACCCTGGTGATCCTACAAGTCCTGCTGTAGGACACCGTCTTCCTGGGTATATGGATTACCAAGGAATGGGCTTAAGATCACAGTTTCCCGTTGAGAGGAAGTGGGCCCTGGGATTACAGTCTCGAGCTCATCCTCGTGAAATTATGACCGAAGTTCTTAAAGCCCTACGAGAGCTCAATGTGGCTTGGAAGAAGATTGGGCACTATAATATGAAATGTAGATGGTTGCCTGGAATTCCAGGCCATCATGAAGGCATGATTAACAACCCTGTGCATAGTAATCATTACTTTGGGGACGAGTCTACCATCATTGAAAACGACGGCGTTGTAAAATCGCCGAATGTTATTAAGTTTGAAGTACAGCTGTACAAAACACGCGAAGAGAAGTATTTGCTTGATCTACAGAGGGTTCAAGGCCCCCAGTTCCTTTTCCTGGATCTTTGTGCTGCTTTCCTTGCCCAGCTCCGAAATCTTAGTTCCTCTTCCCCTTCCCTCTTTAGATGGATAGTTCAATCTTGTGTAAATCTGATTTTCGGTAGTAGAAGTTGTCGATCTCGGTGTCCAATATTGATTGGTGATGCCCTTGCTCCTTGGCTGTCGTTTTCTTGTCGTCAAGATTCCCGAAATCCTTTCCTCTTTGAACTCGCAAAGATGACTCAAGACGCCGAGATGAAAGAGCTTCCTGCTCCATTGTCGTCTTCTTCCTCTTCAGCTTCCCCCTCAACTCTACAACATTTGAAAGAGATTGTGTCGCTCATTGAGACCGGTGCCTATGCTCGGGAGGTTCGGCGGATTGTTCGTGCCATTCGTCTGACTATGGCGTTGAGGCGGAAGTTGAAGGCTTCTGTCGTTTCTCAATTTCTGAATCTTGTTCTCCCCCCAGGGTCCGAGGTGCAGACTAGGTTATCGTCATTTCTTCCAAAGGAGGATGACTGTGAAATGGATGTTGACACGGCAACACAAGCTCCTGCCAAACACCCTTTGCCCGAGATCGAGATATTTTGCTACTTGATTGTGCTAATATTTTTGATTGATCAGAAGAAATATGCTGATGCTAAAGCTTGCGCCTCCGCAAGCATTGCTCGGGTTAAGAACCTTAATAGGAGAACAGTCGATGTTTTAGCATCCAGGCTCTACTTCTATTACTCCCTCAGCTATGAACTCACTGGCGATCTTGCTGAAATAAGGGGCAACCTCCTAGCCCTGCATCGCATTGCAACCTTGCGCCATGATGAATTGGGTCAGGAAACCCTCCTTAACCTTCTACTTCGTAATTACCTCCACTACAACCTTTATGATCAAGCTGAGAAGTTGAGGTCCAAGGCACCCCGGTTTGAAGCTCACTCAAATCAGCAGTTCTGTAGGTACCTATTTTACCTTGGCAAGATCAGGACCATTCAGCTGGAGTACACAGATGCAAAGGAGTCTCTTCTACAAGCTGCTCGGAAAGCACCCATTGCAGCCCTTGGTTTTCGAGTGCAATGCAACAAATGGGCAATCATTGTTCGCTTGCTGCTAGGAGAAATCCCTGAGAGGACCGTTTTCATGCAGAAAGGCATGGAGACAGCTCTGAGGCCATACTTTGAACTTACAAATGCTGTGAGAATTGGTGACTTGGAGCTTTTCAGGACAGTTGCCGAGAAGTTCTCTGGCACTTTCAGCTCAGATCGAACTAACAACTTGATCGTGAGGCTGCGACACAATGTCATTAGGACTGGGCTTCGCAACATTAGCATTTCTTATTCACGAATTTCTCTGGTTGATGTTGCTAAAAAGCTTAGGTTGGACTCAGCAAATCCTGTTGCTGATGCTGAGAGTATCGTCTCCAAGGCAATCCGAGATGGAGCAATTGATGCAACAGTCGATCATGGGAATGGATGGATGGTATCAAAGGAGACTGGTGATATTTACTCTACCAATGAACCTCAGCTTGCTTTCAACTCGAGGATTGCGTTTTGCCTGAATATGCATAATGAGGCAGTTCGTGCCCTTCGGTTTCCACCAAATTCACATAAGGAAAAAGAAAGCGCCGAGAAAAGAAGAGAAAGACAACAGCAGGAGCAAGAACTTGCAAAACACATAGCCGAAGAAGATGACGACGACTTTTAG 3312 45.08 MKLRAQPLERWKGHVFPNPNIEDLHSPSPSLSGPNLLESFASSQMDGPTGRSGGGMDMNLPNYKLGKTLGIGSFGKVKIAEHALTGHKVAIKILNRRKIKNLDMEEKVRREIKILRLFMHPHIIRLYEVIETPADIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSSGARELIPSMLVVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEDILQEVVKMGFDRNQLVESLRNRIQNEATVAYYLLLDNRFRVSSGYLGAEFQETMETGFNHMHPGDPTSPAVGHRLPGYMDYQGMGLRSQFPVERKWALGLQSRAHPREIMTEVLKALRELNVAWKKIGHYNMKCRWLPGIPGHHEGMINNPVHSNHYFGDESTIIENDGVVKSPNVIKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRNLSSSSPSLFRWIVQSCVNLIFGSRSCRSRCPILIGDALAPWLSFSCRQDSRNPFLFELAKMTQDAEMKELPAPLSSSSSSASPSTLQHLKEIVSLIETGAYAREVRRIVRAIRLTMALRRKLKASVVSQFLNLVLPPGSEVQTRLSSFLPKEDDCEMDVDTATQAPAKHPLPEIEIFCYLIVLIFLIDQKKYADAKACASASIARVKNLNRRTVDVLASRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPIAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMETALRPYFELTNAVRIGDLELFRTVAEKFSGTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLVDVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHGNGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNSHKEKESAEKRRERQQQEQELAKHIAEEDDDDF 1103
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3675627 3694099 + CaPI482276_06g001810.1 Cam06g0181 128481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0181 1103 Gene3D Transferase(Phosphotransferase) domain 1 56 395 - -
Cam06g0181 1103 Pfam Kinase associated domain 1 516 557 IPR001772 -
Cam06g0181 1103 MobiDBLite consensus disorder prediction 1067 1096 - -
Cam06g0181 1103 CDD UBA_SnRK1_plant 337 377 - -
Cam06g0181 1103 SUPERFAMILY Protein kinase-like (PK-like) 60 316 IPR011009 -
Cam06g0181 1103 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 336 376 IPR015940 -
Cam06g0181 1103 SMART PCI/PINT associated module 790 961 - -
Cam06g0181 1103 FunFam Non-specific serine/threonine protein kinase 439 557 - -
Cam06g0181 1103 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 619 1099 IPR050756 GO:0006511(PANTHER)|GO:0008541(PANTHER)
Cam06g0181 1103 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 961 1054 IPR000717 -
Cam06g0181 1103 ProSitePatterns Protein kinases ATP-binding region signature. 69 92 IPR017441 GO:0005524(InterPro)
Cam06g0181 1103 Coils Coil 1070 1097 - -
Cam06g0181 1103 MobiDBLite consensus disorder prediction 23 49 - -
Cam06g0181 1103 ProSiteProfiles Protein kinase domain profile. 63 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g0181 1103 Gene3D - 870 1055 - -
Cam06g0181 1103 ProSiteProfiles PCI domain profile. 855 1036 IPR000717 -
Cam06g0181 1103 FunFam Non-specific serine/threonine protein kinase 54 393 - -
Cam06g0181 1103 Pfam Proteasome regulatory subunit C-terminal 1036 1102 IPR013586 GO:0000502(InterPro)|GO:0030234(InterPro)|GO:0042176(InterPro)
Cam06g0181 1103 CDD STKc_AMPK_alpha 60 315 - -
Cam06g0181 1103 FunFam Non-specific serine/threonine protein kinase 53 142 - -
Cam06g0181 1103 Pfam Protein kinase domain 63 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g0181 1103 CDD AMPKA_C 433 556 - -
Cam06g0181 1103 MobiDBLite consensus disorder prediction 1067 1103 - -
Cam06g0181 1103 Pfam PCI domain 953 1032 IPR000717 -
Cam06g0181 1103 SMART uba_6 338 375 IPR015940 -
Cam06g0181 1103 Gene3D Kinase associated domain 1, KA1 439 558 - -
Cam06g0181 1103 FunFam 26S proteasome non-ATPase regulatory subunit 3 736 1059 - -
Cam06g0181 1103 Pfam UBA/TS-N domain 337 373 IPR015940 -
Cam06g0181 1103 SMART serkin_6 63 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g0181 1103 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 510 558 IPR001772 -
Cam06g0181 1103 MobiDBLite consensus disorder prediction 14 55 - -
Cam06g0181 1103 SUPERFAMILY Winged helix DNA-binding domain 963 1037 IPR036390 -
Cam06g0181 1103 SUPERFAMILY KA1-like 372 558 IPR028375 -
Cam06g0181 1103 ProSitePatterns Serine/Threonine protein kinases active-site signature. 182 194 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0425 Cam-Chr2:4978902 Cam06g0181 Cam-Chr6:3675627 4.40E-252 dispersed
Cam02g2180 Cam-Chr2:34542539 Cam06g0181 Cam-Chr6:3675627 8.70E-39 dispersed
Cam06g0181 Cam-Chr6:3675627 Cam11g0055 Cam-Chr11:2136773 4.60E-188 dispersed
Cam06g0181 Cam-Chr6:3675627 Cam05g0059 Cam-Chr5:1051400 8.40E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85232 PF00069 Pkinase 1.20E-79 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0181 K07198 - csv:101211720 1009.59