Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0193 ATGACCCACACCCACACACCAATTGGCCTACATCAAGAGGCCCTGATGAGTGGCGGCGGCGGCGGCGGCCAAGGCGGAGGGCCTTGCGGCGCGTGCAAGTTTTTGAGGAGAAAGTGTGTGAAAGGGTGCATTTTTGCACCCTATTTCGACTCCGAGCAAGGCGCCGCCCACTTTGCGGCCGTGCATAAGGTGTTCGGAGCTAGCAATGCCTCTAAGCTCCTCCACCGCATCCCGCCTCCCAAGCGTCTCGACGCTTGTGTTACTCTTTGTTACGAGGCTCTTGCTAGGGTTCGAGATCCTGTCTACGGTTGTGTTGCTCAAATTTTCACCCTCCAACAACAGGTAGTGAATTTGCAGGCAGAGCTAGCATACATTCAGGCCAAACTTGCCACCTTGCAGCGGCTGTTTCCGCCACCGTTACAGGACGCATCACTGCCCACTCGAGACGCCCTGCTCCCGGAAACGATACCGGGCTCCGACATGGGTTTGATGTCCAACGTTCCAATGCTCCTTGATCCCCTCCAAACGCAGCTAGGTTATAACGAAATGACAAATAATTTTCCGAACCCAATTTATCATCAAGATCAGATGGATGAAGACGGTGATCTTCAGTCTTTGGCTCGAGAATTGGTTTCGAGGTACTTGCCCGAAGTACGACACCGGCCGCCGTGCTCACAGATTTAA 684 53.95 MTHTHTPIGLHQEALMSGGGGGGQGGGPCGACKFLRRKCVKGCIFAPYFDSEQGAAHFAAVHKVFGASNASKLLHRIPPPKRLDACVTLCYEALARVRDPVYGCVAQIFTLQQQVVNLQAELAYIQAKLATLQRLFPPPLQDASLPTRDALLPETIPGSDMGLMSNVPMLLDPLQTQLGYNEMTNNFPNPIYHQDQMDEDGDLQSLARELVSRYLPEVRHRPPCSQI 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3747938 3751373 - CaPI482276_06g001930.1 Cam06g0193 128493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0193 227 PANTHER LOB DOMAIN CONTAINING PROTEIN 24 143 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Cam06g0193 227 Pfam Lateral organ boundaries (LOB) domain 28 126 IPR004883 -
Cam06g0193 227 ProSiteProfiles LOB domain profile. 27 129 IPR004883 -
Cam06g0193 227 Coils Coil 115 135 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0193 Cam-Chr6:3747938 Cam07g0091 Cam-Chr7:2064796 1.00E-33 dispersed
Cam06g0193 Cam-Chr6:3747938 Cam06g0194 Cam-Chr6:3766241 7.40E-40 tandem
Cam05g0253 Cam-Chr5:2483260 Cam06g0193 Cam-Chr6:3747938 7.50E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52078 PF03195 LOB 2.80E-36 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0193 - - - 0.0