Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0194 ATGAGTGCCAACCCTAGTACTAGCGGCGGCGGAGGGCCGGGAACTGCCAGCGCCGGCGGTGGCGTCGGTGGCGGCGGAGGGGGGCCATGTGGAGCTTGCAAGTTTTTGAGAAGAAAGTGTGTTCCCGGTTGCATATTTGCCCCTTATTTCGACTCCGAGCAAGGCGCAGCCCATTTCGCAGCTGTGCACAAGGTGTTCGGAGCCAGCAACGTCTCGAAGCTCCTCCTTCATATTCCGGTCCACAAACGTCTTGATGCTGTCGTCACGATTTGTTACGAGGCTCAAGCACGCCTCCGTGACCCTGTCTACGGTTGCGTTGCTCACATCTTCGCTCTTCAACAACAGGTGGTGAGTTTACAAGCCGAGCTGACTTACCTTCAAGCCCATCTAGCAACACTGGAGCTTCCGTCCCCGCCGAACCCGCCGCCGCCACCTCCGCCACCAAGTTTTCCGGCGCAACCGCCGCTTTCCATCTCAGACCTGCCGTCGGCCTCCTCCCTGCCGGCCACTTACGACTTGTCGTCCCTCTTCGATCCAATGGCTCAGCCTGCATGGGCCATGCAACAGCAGCGGCTCGACCCCCGCCAGTTCGCCGGCGGAGGTGGCGGTTCATCAACGGCGGCAGGAGAAGGCGATCTTCAAGCCCTGGCTCGCGAACTCCTCCATAGACACGGCGCTCTGCCGTGCTCCGACGCCTCGTCGCCGCAATCGCTCTCTAAATGA 723 61.0 MSANPSTSGGGGPGTASAGGGVGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVSLQAELTYLQAHLATLELPSPPNPPPPPPPPSFPAQPPLSISDLPSASSLPATYDLSSLFDPMAQPAWAMQQQRLDPRQFAGGGGGSSTAAGEGDLQALARELLHRHGALPCSDASSPQSLSK 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3766241 3769167 + CaPI482276_06g001940.1 Cam06g0194 128494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0194 240 PANTHER LOB DOMAIN CONTAINING PROTEIN 26 147 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Cam06g0194 240 MobiDBLite consensus disorder prediction 135 155 - -
Cam06g0194 240 Pfam Lateral organ boundaries (LOB) domain 29 127 IPR004883 -
Cam06g0194 240 MobiDBLite consensus disorder prediction 185 219 - -
Cam06g0194 240 MobiDBLite consensus disorder prediction 134 158 - -
Cam06g0194 240 ProSiteProfiles LOB domain profile. 28 130 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0253 Cam-Chr5:2483260 Cam06g0194 Cam-Chr6:3766241 2.30E-54 dispersed
Cam06g0194 Cam-Chr6:3766241 Cam07g0090 Cam-Chr7:2055102 7.50E-43 dispersed
Cam06g0193 Cam-Chr6:3747938 Cam06g0194 Cam-Chr6:3766241 7.40E-40 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52079 PF03195 LOB 2.70E-38 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0194 K21994 - csv:101220603 378.637