Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0196 ATGGATGGAATTACACCCCACAATCGCCCTCTTCCTCCTCCTTTCCTTTCCAAAGATCTCCATCTCCACCATGGATTATTCCACCACCACCAAAACTCCGACGACGACCAAACCGCCGGAGCTAAGAGAGATAGAGAGGACGAAAACCCCACCACGGCGGCGATGGCGGACAGCAAAGAATTATCTAATTCTTCATCTCGACGCCCACGTGGCCGACCAGCTGGTTCCAAAAACAAGCCAAAGCCACCCATTATAATTACTAGAGACAGCGCTAACGCCCTCAGATCTCATCTCATCGAAATCTCCACTGCCTCCGACATCGTCGATTCCCTCGCTGCCTTCGCACGCCGCCGCCAGCGTGGCGTTTGTATTCTAAGTGCCACGGGTACCGTCGCCAACGTCACTCTCCGGCAGCCGGCCTCCCCCGGCGCTGTCATCACCTTACATGGGAGATTTGAAATTCTCTCCCTCTCCGGCTCTTTCCTCCCACCGCCGGCTCCCCCGGCCGCCTCTGGTCTGACCGTCTACTTGGCTGGCGGGCAGGGGCAGGTCGTCGGTGGGAATGTAATCGGCCCACTTTCGGCGTCCGGTCCGGTGATTATCATGGCGGCTTCTTTTGGTAATGCTGCGTATGAACGGCTACCCATTGATGACGACGACGAAACGTCACCGGCAGCAGAGATTGCCGGACAACAGGCAGCACCGCCGCCGCCACAATTGATGGGGGATCCTAATGGGGGATTGTTCCATGGGATGGCGCAGAATGTTGTGAATTCTTCATGCCAATTGCCGGCAGAGGCGGCGGCGGCGTTTTGGGGAGGAGGTCGGCCACCGTATTGA 840 57.5 MDGITPHNRPLPPPFLSKDLHLHHGLFHHHQNSDDDQTAGAKRDREDENPTTAAMADSKELSNSSSRRPRGRPAGSKNKPKPPIIITRDSANALRSHLIEISTASDIVDSLAAFARRRQRGVCILSATGTVANVTLRQPASPGAVITLHGRFEILSLSGSFLPPPAPPAASGLTVYLAGGQGQVVGGNVIGPLSASGPVIIMAASFGNAAYERLPIDDDDETSPAAEIAGQQAAPPPPQLMGDPNGGLFHGMAQNVVNSSCQLPAEAAAAFWGGGRPPY 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3789490 3790329 + CaPI482276_06g001960.1 Cam06g0196 128496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0196 279 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 34 240 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Cam06g0196 279 MobiDBLite consensus disorder prediction 55 71 - -
Cam06g0196 279 FunFam AT-hook motif nuclear-localized protein 94 221 - -
Cam06g0196 279 Pfam Plants and Prokaryotes Conserved (PCC) domain 95 206 IPR005175 -
Cam06g0196 279 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 218 - -
Cam06g0196 279 CDD DUF296 95 206 IPR005175 -
Cam06g0196 279 ProSiteProfiles PPC domain profile profile. 91 231 IPR005175 -
Cam06g0196 279 Gene3D - 94 224 - -
Cam06g0196 279 MobiDBLite consensus disorder prediction 216 244 - -
Cam06g0196 279 MobiDBLite consensus disorder prediction 28 85 - -
Cam06g0196 279 MobiDBLite consensus disorder prediction 28 53 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0196 Cam-Chr6:3789490 Cam09g1197 Cam-Chr9:13079260 4.60E-60 dispersed
Cam02g0333 Cam-Chr2:4065479 Cam06g0196 Cam-Chr6:3789490 8.30E-59 transposed
Cam01g0352 Cam-Chr1:3904616 Cam06g0196 Cam-Chr6:3789490 9.40E-75 wgd
Cam05g0890 Cam-Chr5:8028536 Cam06g0196 Cam-Chr6:3789490 2.10E-20 wgd
Cam05g0248 Cam-Chr5:2445376 Cam06g0196 Cam-Chr6:3789490 1.30E-67 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0196 - - - 0.0