Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0205 ATGGTGAGAGGAAAGACGCAGATGAGGCTAATAGAGAACGCCACAAGCCGACAAGTCACCTTCTCCAAGAGGCGAAATGGTTTGATGAAAAAAGCTTTTGAGCTATCAGTTCTCTGTGATGCTGAAGTTGCTCTTATTATTTTCTCCCCTAGAGGAAAGCTTTACGAATTTGCTAGCTCAAGCATGCAGGCAACTATAGAGCGTTACCGAAAGCATGCAAAAACCAAGGATGCCCAGGATCCTCCATCTGTTAATAATGTTGTACAGTTGGAGCATCTGAATCATGAAGAAGCAGCTAGCCTGATGAAGAAAATAGAGCAACTTGAAGTTTCAAAACGGAAAATGTTGGGAGAAGATCTGGGATCTTGCTCCATGGATGAACTTCAACAACTTGAAAATCAGTTGGAGAAAAGTGTTTGCAAAATTAGAGCCAGAAAGATTGAAGTGTTTGAAGAACAGATTAAACAACTAAGGCAAAAGGAGAAAGTCTTGCAAGATGAAAATGCTAAGCTACTTCAAAAGTGGGAAAGTGAGGGAGATGGAGGAGTAAATAATGAAGGAGAAAGAGGAGAGAAATTGTTAAACTATGCAGAAAGTAGCAGCCCAAGTTCTGAGGTGGAGACGGAATTGTTCATTGGGCCACCCGAAGCAAGGCCCAGAAGATTTCTTTCCCTTCACTGA 681 41.85 MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQATIERYRKHAKTKDAQDPPSVNNVVQLEHLNHEEAASLMKKIEQLEVSKRKMLGEDLGSCSMDELQQLENQLEKSVCKIRARKIEVFEEQIKQLRQKEKVLQDENAKLLQKWESEGDGGVNNEGERGEKLLNYAESSSPSSEVETELFIGPPEARPRRFLSLH 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3860435 3871574 + CaPI482276_06g002050.1 Cam06g0205 128505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0205 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam06g0205 226 Coils Coil 98 118 - -
Cam06g0205 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam06g0205 226 FunFam MADS-box transcription factor 1 13 83 - -
Cam06g0205 226 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam06g0205 226 SUPERFAMILY SRF-like 3 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam06g0205 226 Coils Coil 128 174 - -
Cam06g0205 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 186 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cam06g0205 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam06g0205 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam06g0205 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam06g0205 226 CDD MADS_MEF2_like 3 72 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cam06g0205 226 Gene3D - 14 93 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam06g0205 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam06g0205 226 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cam06g0205 226 Pfam K-box region 94 175 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0544 Cam-Chr1:5804138 Cam06g0205 Cam-Chr6:3860435 1.10E-42 dispersed
Cam05g0228 Cam-Chr5:2265301 Cam06g0205 Cam-Chr6:3860435 3.30E-54 dispersed
Cam05g0921 Cam-Chr5:8343523 Cam06g0205 Cam-Chr6:3860435 3.00E-45 dispersed
Cam06g0205 Cam-Chr6:3860435 Cam08g0041 Cam-Chr8:947872 7.10E-35 dispersed
Cam06g0205 Cam-Chr6:3860435 Cam06g0206 Cam-Chr6:3872937 3.20E-35 tandem
Cam01g0326 Cam-Chr1:3644886 Cam06g0205 Cam-Chr6:3860435 5.60E-52 wgd
Cam05g0915 Cam-Chr5:8229603 Cam06g0205 Cam-Chr6:3860435 2.60E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52080 PF01486 K-box 1.70E-25 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0205 - - - 0.0