Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam06g0205 | ATGGTGAGAGGAAAGACGCAGATGAGGCTAATAGAGAACGCCACAAGCCGACAAGTCACCTTCTCCAAGAGGCGAAATGGTTTGATGAAAAAAGCTTTTGAGCTATCAGTTCTCTGTGATGCTGAAGTTGCTCTTATTATTTTCTCCCCTAGAGGAAAGCTTTACGAATTTGCTAGCTCAAGCATGCAGGCAACTATAGAGCGTTACCGAAAGCATGCAAAAACCAAGGATGCCCAGGATCCTCCATCTGTTAATAATGTTGTACAGTTGGAGCATCTGAATCATGAAGAAGCAGCTAGCCTGATGAAGAAAATAGAGCAACTTGAAGTTTCAAAACGGAAAATGTTGGGAGAAGATCTGGGATCTTGCTCCATGGATGAACTTCAACAACTTGAAAATCAGTTGGAGAAAAGTGTTTGCAAAATTAGAGCCAGAAAGATTGAAGTGTTTGAAGAACAGATTAAACAACTAAGGCAAAAGGAGAAAGTCTTGCAAGATGAAAATGCTAAGCTACTTCAAAAGTGGGAAAGTGAGGGAGATGGAGGAGTAAATAATGAAGGAGAAAGAGGAGAGAAATTGTTAAACTATGCAGAAAGTAGCAGCCCAAGTTCTGAGGTGGAGACGGAATTGTTCATTGGGCCACCCGAAGCAAGGCCCAGAAGATTTCTTTCCCTTCACTGA | 681 | 41.85 | MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQATIERYRKHAKTKDAQDPPSVNNVVQLEHLNHEEAASLMKKIEQLEVSKRKMLGEDLGSCSMDELQQLENQLEKSVCKIRARKIEVFEEQIKQLRQKEKVLQDENAKLLQKWESEGDGGVNNEGERGEKLLNYAESSSPSSEVETELFIGPPEARPRRFLSLH | 226 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 3860435 | 3871574 | + | CaPI482276_06g002050.1 | Cam06g0205 | 128505 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam06g0205 | 226 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 11 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam06g0205 | 226 | Coils | Coil | 98 | 118 | - | - | |
Cam06g0205 | 226 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam06g0205 | 226 | FunFam | MADS-box transcription factor 1 | 13 | 83 | - | - | |
Cam06g0205 | 226 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam06g0205 | 226 | SUPERFAMILY | SRF-like | 3 | 80 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam06g0205 | 226 | Coils | Coil | 128 | 174 | - | - | |
Cam06g0205 | 226 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 186 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cam06g0205 | 226 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam06g0205 | 226 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam06g0205 | 226 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam06g0205 | 226 | CDD | MADS_MEF2_like | 3 | 72 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Cam06g0205 | 226 | Gene3D | - | 14 | 93 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam06g0205 | 226 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam06g0205 | 226 | ProSiteProfiles | K-box domain profile. | 91 | 181 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cam06g0205 | 226 | Pfam | K-box region | 94 | 175 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g0544 | Cam-Chr1:5804138 | Cam06g0205 | Cam-Chr6:3860435 | 1.10E-42 | dispersed | |
Cam05g0228 | Cam-Chr5:2265301 | Cam06g0205 | Cam-Chr6:3860435 | 3.30E-54 | dispersed | |
Cam05g0921 | Cam-Chr5:8343523 | Cam06g0205 | Cam-Chr6:3860435 | 3.00E-45 | dispersed | |
Cam06g0205 | Cam-Chr6:3860435 | Cam08g0041 | Cam-Chr8:947872 | 7.10E-35 | dispersed | |
Cam06g0205 | Cam-Chr6:3860435 | Cam06g0206 | Cam-Chr6:3872937 | 3.20E-35 | tandem | |
Cam01g0326 | Cam-Chr1:3644886 | Cam06g0205 | Cam-Chr6:3860435 | 5.60E-52 | wgd | |
Cam05g0915 | Cam-Chr5:8229603 | Cam06g0205 | Cam-Chr6:3860435 | 2.60E-32 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52080 | PF01486 | K-box | 1.70E-25 | No_clan | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam06g0205 | - | - | - | 0.0 |