Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam06g0206 | ATGGGAAGAGGAAGAGTGGAACTGAAGAGAATAGAGAACAAAATCAACCGTCAAGTTACATTCTCAAAACGCCGAAACGGACTCCTGAAAAAGGCTTATGAACTGTCTGTTCTTTGCGATGCGGAAGTGGCTTTGATCATCTTCTCCACCCGCGGGAAGCTCTACGAATTTGGCAGTGCTGGTACCACCAAAACATTGGAGCGATATCAACGTTGTTGCTTCTCTCCTCAACACAATTATGCTGAACGACAAACCCAGAACTGGTTCCAGGAGATCTCAAAACTGAAAGCTAAATATGAATCTCTTTGCCGCACTCATAGGCATTTGCTTGGGGAAGATCTTGGACCATTGAGTGTAAAGGAGCTCCAAAATCTTGAGAAGCAACTTGAAGCAGCCCTTGCTCAAGCTAGACAAAGGAAGACACAGATTATGATTGAGCAGATGGAAGACCTGCGCAGAAAGGAGCGTCAACTTGGGGACCTCAACAGGGAGCTTAAGCTCAAGCTTGAAGCAGAGGGACAAAATCTTACAGCCATCCAAAGTTTTTGGAGCTCTGGGTCTGGCTCTGCTGAACATGCCAACAACTTCCCATTGCATCCTTTACCACCTAACCCTATCGAATGCCAACATGAACCCGTCTTACAAATCGGGTACCAGAATTATTTCTCAGAAGAGGGGCCATCTGTCCAAAAGAGCATGGCATGTGAGACAAACTTCATACAAGGATGGGTTATTTGA | 738 | 45.66 | MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFGSAGTTKTLERYQRCCFSPQHNYAERQTQNWFQEISKLKAKYESLCRTHRHLLGEDLGPLSVKELQNLEKQLEAALAQARQRKTQIMIEQMEDLRRKERQLGDLNRELKLKLEAEGQNLTAIQSFWSSGSGSAEHANNFPLHPLPPNPIECQHEPVLQIGYQNYFSEEGPSVQKSMACETNFIQGWVI | 245 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 3872937 | 3877629 | - | CaPI482276_06g002060.1 | Cam06g0206 | 128506 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam06g0206 | 245 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam06g0206 | 245 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 188 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cam06g0206 | 245 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam06g0206 | 245 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam06g0206 | 245 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam06g0206 | 245 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam06g0206 | 245 | Coils | Coil | 119 | 171 | - | - | |
Cam06g0206 | 245 | Pfam | K-box region | 82 | 169 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cam06g0206 | 245 | CDD | MADS_MEF2_like | 2 | 72 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Cam06g0206 | 245 | SUPERFAMILY | SRF-like | 2 | 92 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam06g0206 | 245 | Gene3D | - | 13 | 83 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam06g0206 | 245 | ProSiteProfiles | K-box domain profile. | 85 | 175 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cam06g0206 | 245 | FunFam | MADS-box transcription factor 1 | 13 | 85 | - | - | |
Cam06g0206 | 245 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam06g0206 | 245 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam03g0382 | Cam-Chr3:4909282 | Cam06g0206 | Cam-Chr6:3872937 | 2.30E-37 | dispersed | |
Cam05g0915 | Cam-Chr5:8229603 | Cam06g0206 | Cam-Chr6:3872937 | 8.50E-52 | dispersed | |
Cam06g0206 | Cam-Chr6:3872937 | Cam07g1621 | Cam-Chr7:30810847 | 3.50E-56 | dispersed | |
Cam06g0205 | Cam-Chr6:3860435 | Cam06g0206 | Cam-Chr6:3872937 | 3.20E-35 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52081 | PF01486 | K-box | 5.40E-29 | No_clan | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam06g0206 | K09264 | - | csv:101219421 | 419.468 |