Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0206 ATGGGAAGAGGAAGAGTGGAACTGAAGAGAATAGAGAACAAAATCAACCGTCAAGTTACATTCTCAAAACGCCGAAACGGACTCCTGAAAAAGGCTTATGAACTGTCTGTTCTTTGCGATGCGGAAGTGGCTTTGATCATCTTCTCCACCCGCGGGAAGCTCTACGAATTTGGCAGTGCTGGTACCACCAAAACATTGGAGCGATATCAACGTTGTTGCTTCTCTCCTCAACACAATTATGCTGAACGACAAACCCAGAACTGGTTCCAGGAGATCTCAAAACTGAAAGCTAAATATGAATCTCTTTGCCGCACTCATAGGCATTTGCTTGGGGAAGATCTTGGACCATTGAGTGTAAAGGAGCTCCAAAATCTTGAGAAGCAACTTGAAGCAGCCCTTGCTCAAGCTAGACAAAGGAAGACACAGATTATGATTGAGCAGATGGAAGACCTGCGCAGAAAGGAGCGTCAACTTGGGGACCTCAACAGGGAGCTTAAGCTCAAGCTTGAAGCAGAGGGACAAAATCTTACAGCCATCCAAAGTTTTTGGAGCTCTGGGTCTGGCTCTGCTGAACATGCCAACAACTTCCCATTGCATCCTTTACCACCTAACCCTATCGAATGCCAACATGAACCCGTCTTACAAATCGGGTACCAGAATTATTTCTCAGAAGAGGGGCCATCTGTCCAAAAGAGCATGGCATGTGAGACAAACTTCATACAAGGATGGGTTATTTGA 738 45.66 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFGSAGTTKTLERYQRCCFSPQHNYAERQTQNWFQEISKLKAKYESLCRTHRHLLGEDLGPLSVKELQNLEKQLEAALAQARQRKTQIMIEQMEDLRRKERQLGDLNRELKLKLEAEGQNLTAIQSFWSSGSGSAEHANNFPLHPLPPNPIECQHEPVLQIGYQNYFSEEGPSVQKSMACETNFIQGWVI 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3872937 3877629 - CaPI482276_06g002060.1 Cam06g0206 128506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0206 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam06g0206 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 188 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cam06g0206 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam06g0206 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam06g0206 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam06g0206 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam06g0206 245 Coils Coil 119 171 - -
Cam06g0206 245 Pfam K-box region 82 169 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cam06g0206 245 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cam06g0206 245 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam06g0206 245 Gene3D - 13 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam06g0206 245 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cam06g0206 245 FunFam MADS-box transcription factor 1 13 85 - -
Cam06g0206 245 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam06g0206 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0382 Cam-Chr3:4909282 Cam06g0206 Cam-Chr6:3872937 2.30E-37 dispersed
Cam05g0915 Cam-Chr5:8229603 Cam06g0206 Cam-Chr6:3872937 8.50E-52 dispersed
Cam06g0206 Cam-Chr6:3872937 Cam07g1621 Cam-Chr7:30810847 3.50E-56 dispersed
Cam06g0205 Cam-Chr6:3860435 Cam06g0206 Cam-Chr6:3872937 3.20E-35 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52081 PF01486 K-box 5.40E-29 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0206 K09264 - csv:101219421 419.468