Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0223 ATGAGTTTTGGGGGTTTCCTCGACGGCGGCGGCGGCGGAGGAGGCGGTGGTGCTCGAATCTTAGCCGATTTACCTTACACAAATAACTCCACCACCAACGCCAACAATAACCCCACCGGCGGCATCGGCGGCGGCGGAAATATGTCCTCCGGCGCAATCGCTCCGCCGCGCCTCATCACTCAATCTCTCACCAAATCGATGTTCAACTCCCCCGGACTCTCTCTCGCTCTTACGAACATGGACGGCGGGCAGGGGGATTTAGCTGCCCGACTGCCCGAGGGTTTCGAGCATAATGTTGGAAGAAGAGGCAGAGAAGAAGAACACGAGAGTAGATCTGGGAGTGACAACATGGACGGTGGCTCCGGTGATGACCAGGACGCCGCCGACAACCCTCCGAGGAAGAAACGTTACCACCGACACACTCCTCAGCAAATCCAAGAGCTCGAAGCTGTCTTTAAAGAGTGCCCTCATCCTGATGAGAAGCAACGGCTCGAGTTGAGTCGGAGGCTGTGTTTAGAAACTAGGCAAGTTAAATTTTGGTTCCAAAATCGGAGGACCCAAATGAAGACCCAATTGGAACGCCATGAGAATACTTTACTTAGACAGGAGAATGATAAGCTTAGAGCTGAGAATATGTCGATTCGAGATGCTATGAGGAACCCAATCTGTTCGAACTGTGGTGGTCCAGCAATCATCGGCGAAATCTCGCTGGAAGAACAGCAGTTGAGGATTGAAAATGCTCGGCTAAAGGATGAATTGGACCGGGTTTGTGCGCTCGCTGGGAAGTTTCTTGGCAGGCCGATTTCGTCGCTGGCTAACTCAATTGCACCTCCATTGCCAAGCTCGAGTCTGGAACTGGGAGTTGGGAGTAATGGGTTTGGGAGTTTGACCATGGCAACGTCAATGCCTATTGGGCCTGATTTCGGAGGTGGGTTGTCAGGCAATCTGGCTGTCGTTCAGCCACCTGCGAGGCCAACACCGGGGATGGGACTTGATCGTTCAGTTGAGCGATCTATGCTACTGGAGCTTGCTTTGGCTGCCATGGATGAATTGGTCAAAATGGCGCAGACGGACGAGCCACTTTGGATTGGGAGCTTGGAAGGTGGGAGAGAAATACTGAACCAGGAGGAGTACATGAGGACATTCACTCCTTGCATAGGCATGAAACCAAACGGTTTTGTCACCGAGGCGTCGAGAGAAACTGGCATGGTGATCATCAATAGCTTGGCTCTCGTGGAGACATTGATGGACTCGAATCGATGGGCAGAGATGTTTCCGTGTATGATTGCTCGAACCACGACCACTGATGTGATCTCCAGTGGCATGGGGGGAACGAGGAATGGTGCACTTCAACTGATGCACGCAGAGCTTCAAGTGCTCTCACCGTTGGTGCCAGTCCGGGAAGTCAATTTTCTGCGGTTTTGCAAGCAGCACGCCGAAGGGGTATGGGCAGTCGTCGATGTATCGGTCGATACCATGAGAGAGACTCCGACCAGTGGTGGTCCTTCATTTGGCAACTGCAGAAGGCTTCCTTCTGGGTGTGTTGTTCAAGACATGCCCAACGGGTATTCCAAGGTTACGTGGGTGGAACATGCGGAGTACGATGATAGCCAAGTGCACCAGCTCTACCGTCCCCTACTCAGCTCTGGTATGGGCTTTGGAGCGCAACGGTGGGTTGCCACCCTTCAACGACAATGTGAATGCCTCGCCATCCTCATGTCATCCGCTGTACCAATCCGAGACCACACCGCCATAACCGCAGGTGGGCGGCGGAGCATGCTGAAGCTAGCCCAGCGAATGACAGCGAACTTCTGCGCAGGTGTGTGTGCATCCACAGTGCACAAATGGAACAAGCTGAATGCTGGGAGCGTAGATGAGGACGTCCGTGTCATGACGCGGAAGAGTGTGGACGATCCTGGGGAGCCTCCGGGTATTGTGTTGAGCGCCGCTACGTCAGTGTGGCTCCCGGTATCTCCCCAACGGCTCTTTGATTTCCTTCGTGACGAGCGGCTGAGGAGTGAATGGGACATCCTATCCAACGGCGGCCCCATGCAGGAGATGGCCCATATTGCCAAAGGCCAAGATCATGGCAACTGCGTCTCTCTTTTAAGAGCCAGCGCTATGAATGCGAACCAGAGCAGTATGTTGATTCTACAAGAGACATGCATAGACGCGGCGGGATCGCTTGTGGTGTACGCGCCGGTGGACATTCCGGCAATGCACGTCGTGATGAACGGTGGCGATTCGGCTTACGTGGCACTTTTACCGTCAGGGTTTGCGATCGTGCCTGACGGGGCGGTGACAGTGACCAATGGGAGCAGTCCAAGTGGCGGGGAGGGTCCACAGAGTCAGAGAGCGACAGGCGGTGGGTCCCTCCTCACCGTCGCATTTCAGATCCTCGTGAATAGCCTCCCTACAGCCAAGCTCACCGTAGAATCGGTTGAAACGGTCAATAATCTCATATCTTGCACCGTCCAGAAAATCAAGGCCGCTCTTCAATGCGAAACCTGA 2511 54.2 MSFGGFLDGGGGGGGGGARILADLPYTNNSTTNANNNPTGGIGGGGNMSSGAIAPPRLITQSLTKSMFNSPGLSLALTNMDGGQGDLAARLPEGFEHNVGRRGREEEHESRSGSDNMDGGSGDDQDAADNPPRKKRYHRHTPQQIQELEAVFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPICSNCGGPAIIGEISLEEQQLRIENARLKDELDRVCALAGKFLGRPISSLANSIAPPLPSSSLELGVGSNGFGSLTMATSMPIGPDFGGGLSGNLAVVQPPARPTPGMGLDRSVERSMLLELALAAMDELVKMAQTDEPLWIGSLEGGREILNQEEYMRTFTPCIGMKPNGFVTEASRETGMVIINSLALVETLMDSNRWAEMFPCMIARTTTTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSVDTMRETPTSGGPSFGNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDDSQVHQLYRPLLSSGMGFGAQRWVATLQRQCECLAILMSSAVPIRDHTAITAGGRRSMLKLAQRMTANFCAGVCASTVHKWNKLNAGSVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGAVTVTNGSSPSGGEGPQSQRATGGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCET 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4022139 4027001 + CaPI482276_06g002230.1 Cam06g0223 128523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0223 836 CDD START_ArGLABRA2_like 337 567 - -
Cam06g0223 836 Gene3D - 121 207 - -
Cam06g0223 836 SMART START_1 342 568 IPR002913 GO:0008289(InterPro)
Cam06g0223 836 ProSitePatterns 'Homeobox' domain signature. 166 189 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cam06g0223 836 MobiDBLite consensus disorder prediction 95 114 - -
Cam06g0223 836 Coils Coil 185 217 - -
Cam06g0223 836 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 112 835 IPR042160 -
Cam06g0223 836 Pfam Homeodomain 134 189 IPR001356 GO:0003677(InterPro)
Cam06g0223 836 ProSiteProfiles 'Homeobox' domain profile. 131 191 IPR001356 GO:0003677(InterPro)
Cam06g0223 836 SUPERFAMILY Bet v1-like 596 829 - -
Cam06g0223 836 Pfam START domain 342 568 IPR002913 GO:0008289(InterPro)
Cam06g0223 836 FunFam Homeobox-leucine zipper protein GLABRA 2 342 567 - -
Cam06g0223 836 CDD homeodomain 133 191 IPR001356 GO:0003677(InterPro)
Cam06g0223 836 SMART HOX_1 132 195 IPR001356 GO:0003677(InterPro)
Cam06g0223 836 Coils Coil 232 252 - -
Cam06g0223 836 MobiDBLite consensus disorder prediction 94 141 - -
Cam06g0223 836 SUPERFAMILY Homeodomain-like 116 191 IPR009057 -
Cam06g0223 836 FunFam Homeobox-leucine zipper protein HDG1 121 207 - -
Cam06g0223 836 SUPERFAMILY Bet v1-like 335 568 - -
Cam06g0223 836 ProSiteProfiles START domain profile. 333 571 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2268 Cam-Chr1:34996730 Cam06g0223 Cam-Chr6:4022139 3.80E-191 dispersed
Cam02g0194 Cam-Chr2:2859260 Cam06g0223 Cam-Chr6:4022139 2.10E-208 dispersed
Cam03g0488 Cam-Chr3:5826529 Cam06g0223 Cam-Chr6:4022139 3.10E-188 dispersed
Cam05g1629 Cam-Chr5:23350431 Cam06g0223 Cam-Chr6:4022139 2.20E-78 dispersed
Cam06g0223 Cam-Chr6:4022139 Cam07g1252 Cam-Chr7:26905000 4.20E-149 dispersed
Cam04g1303 Cam-Chr4:26836084 Cam06g0223 Cam-Chr6:4022139 2.00E-189 transposed
Cam05g1236 Cam-Chr5:11944761 Cam06g0223 Cam-Chr6:4022139 9.90E-160 transposed
Cam09g1150 Cam-Chr9:12205998 Cam06g0223 Cam-Chr6:4022139 9.90E-172 transposed
Cam05g0949 Cam-Chr5:8569244 Cam06g0223 Cam-Chr6:4022139 1.30E-266 wgd
Cam05g0210 Cam-Chr5:2121602 Cam06g0223 Cam-Chr6:4022139 2.60E-257 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52084 PF01852 START 2.50E-58 CL0209 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0223 K09338 - csv:101222248 1540.4