Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0239 ATGGATCAATTTCTTACCAAAACAAAAGAAGATCAAGAAGATCAAGAAGAAGAAGATGAAGAAGAAGAAGAAGAAGATCAAGATCAAGTTGTTGCATGCAATTTCTTCCCAAATTCTCACTCCCAATTAACTCAACAACAAGATCGAGATCAAGAAAGTGGAAATTATGAGTCTCAAAATGAAGATCAACCGATACTCATGGATTTATCCTTAAGAATGGAAAGCAATGGCTTTGATGGTGTTGTAGAAAGAGAACACATGTTTGATAAAGTTGTTACTCCAAGTGATGTTGGCAAATTAAACCGTTTAGTCATCCCAAAACAACATGCTGAAAAATACTTCCCTTTAGACTCATCCACCAACGACAAAGGCCTCATCTTGAACTTTGAAGACCGTCATGGAAAGCCTTGGCGCTTTCGTTACTCTTATTGGAATAGTAGCCAAAGCTATGTCATGACTAAAGGTTGGAGCCGTTTTGTTAAGGAGAAAAAACTCGACGCCGGCGACATCGTTTCCTTCCACCGTGCTCTCCCGAGTCATTCCGCCAACGACAACCGTCTTTTTATCGACTGGCGTCGTCGTCGCCCTGACGCTCCTACTCCTCATCACAATCATCACCACCATTTCTCCAACCCTTTTCTCTTTCGTTGGGCTACTGCTCGTCACTTGCCACCACCACTGCCTCCTATGCGACGAACAACTCAACACCACCATCTTTACCCTAATTACGGGTTTGAAGTCCCTAACTTTGGGATGTCTAATAACAATAATTCTTCCATGTATTATTTTCGACCTATGTCGCCTTCTTCTTCTTTTTCTTCGTCTCTTTATAGGATGGGAAATGGGGATGAGATTGTTGTTAATAATCAAGGATGTTCTTCTATGGGGATTATTAACAAACCCGGCTCCAGCGCTGCGAAACGGTTGAGACTCTTTGGAGTGAATATGGAGTGTGCTTCACCGGACGGAGAAGGAGGAGGAGGAGAGGATTTGTCGAACAGTGGCGATTCGAGAAGAGGGAAAGAACCCTTGTCATTGAATTGGGATTTACTTTAA 1056 42.52 MDQFLTKTKEDQEDQEEEDEEEEEEDQDQVVACNFFPNSHSQLTQQQDRDQESGNYESQNEDQPILMDLSLRMESNGFDGVVEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSTNDKGLILNFEDRHGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHRALPSHSANDNRLFIDWRRRRPDAPTPHHNHHHHFSNPFLFRWATARHLPPPLPPMRRTTQHHHLYPNYGFEVPNFGMSNNNNSSMYYFRPMSPSSSFSSSLYRMGNGDEIVVNNQGCSSMGIINKPGSSAAKRLRLFGVNMECASPDGEGGGGEDLSNSGDSRRGKEPLSLNWDLL 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4189233 4190288 + CaPI482276_06g002390.1 Cam06g0239 128539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0239 351 MobiDBLite consensus disorder prediction 1 63 - -
Cam06g0239 351 MobiDBLite consensus disorder prediction 319 351 - -
Cam06g0239 351 MobiDBLite consensus disorder prediction 12 29 - -
Cam06g0239 351 ProSiteProfiles B3 DNA-binding domain profile. 88 195 IPR003340 GO:0003677(InterPro)
Cam06g0239 351 Coils Coil 5 29 - -
Cam06g0239 351 CDD B3_DNA 86 175 IPR003340 GO:0003677(InterPro)
Cam06g0239 351 SMART B3_2 88 195 IPR003340 GO:0003677(InterPro)
Cam06g0239 351 Pfam B3 DNA binding domain 88 194 IPR003340 GO:0003677(InterPro)
Cam06g0239 351 SUPERFAMILY DNA-binding pseudobarrel domain 85 176 IPR015300 -
Cam06g0239 351 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 12 316 IPR044800 GO:0003700(InterPro)
Cam06g0239 351 MobiDBLite consensus disorder prediction 32 63 - -
Cam06g0239 351 Gene3D - 81 209 IPR015300 -
Cam06g0239 351 FunFam B3 domain-containing protein 81 206 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2502 Cam-Chr5:32833227 Cam06g0239 Cam-Chr6:4189233 6.60E-40 dispersed
Cam06g0239 Cam-Chr6:4189233 Cam07g0833 Cam-Chr7:20827098 1.50E-52 dispersed
Cam06g0239 Cam-Chr6:4189233 Cam01g0127 Cam-Chr1:1580753 9.00E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52086 PF02362 B3 2.30E-28 CL0405 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0239 K09287 - csv:101221141 525.783