Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0278 ATGGGGAAGAAAGGAGGTAGCTCATGGTTGACTGCCGTCAAAAGGGCTTTCAGATCTCCCACTAAAGATGATGATGAAAAGAGAAGAGAGAAACGCCGCTGGATTTTCAGAAAACCAACAAATCAGCCGCCGGAGCCACTCGCCGCCCACCAACCGCCGTCTAAGCCCCCGGCTCTCTCCACTCATTCTGTAGCTTTAGAAGACCAGAAACATGCCCTTGCAGTGGCTGAAGCTGCCATGGTCGCCGCCAGAGCGGCTGCACAAGCCGTCCACCTCACCCGCCCTGCCCGTCCTGGATTGGATCCCCATCGCCTCGCCGCCATTGTGATTCAAACTGCCTTTAGAGGATATCTGGCAAGGAGGGCTCTACGGGCATTGAAGGGGTTGGTGAAGTTGCAGGCATTAGTGAGAGGACACAATGTGAGGAAGCAAGCAAAGACGACGCTGCAGTGTATGAAAGCATTAGTGAGAGTGCAGGAAAAAGTTCTCGATCACCGGATGCGACTTTCCCTCGAGGGTAGCCGACGGTCTACATTCAGCGACACTAACAGCGTGTATGAATCTCGCAATGCTCAAGACGTCTCCGAGAGGAAGACTATTAAGTGTGTATCAAGAGAAGGAAGCAGCATTACGGAGGATTGGGATGAACGTGCTCACACAGTTGAAGAAGTAAAAGCAATGTTACAATATAGAAGAGATGCTGCTTTGAATCGTGACAACATTTTATCTCATTCCTTTTCTCAACAGATATGGAGGACTGGAAAGAGCCCATCAATAGGAAATCAAGCGGAGCTTGAAGAAGGACAAAAATGGCTCGACCAATGGATGGCGAAGAAGCCATGGGAGAATAGAGCAAGAGCTTCCACAGATAACAGACCACAGCCCCTTAAAACGCTCGAAATCGACACTTCTAGGCCCTACTCCTACTTATCTCCCAACAATCTCCACACAACGAATTATCAAACGCAATCACAAAGATCGAACTCGCTTTCCTCATCCTCCCCACTCCACAGAGCCCATCACCATCAGTTCTCCATCACCCCTTCCCCATCAAAATCTCGACCGGTCCAGCAAGTTCGGTCGGCGAGTCCCCGCTACAGCAGAGAAGATAGAAACCAAATCAGCCACCACATTACATCCCAAACACCAAGCTTGAGGACAAAACATCAACATCACAAATGGGGTAGTGGTGGTGGGACTTCAATGCCAAATTACATGGCAGCAACAGAGTCAGCCAAGGCACGAGTCCGGTCGCAAAGTGCGCCGAGGCAAAGGCCAGCAACACCCGAGAGGGAACGAGTTGGAACTGCGAGGAAGCGGCTATCTTTTCCAGTACCGCCGGATCCTTACGGTAGAATAGTAGGGTGCGGTGTTTATGGGAATAGCATGAAGAGCCCAAGTTTTAAGAGTGCTTGTGGAAGGTATGGTGGGTTGGAGGAACAGTCTAACTATTCTTCTTGCTATACAGAAAGCCATGGAGGAGAGGTTTCACCATCTTCAACCACTGACCTCAGAAGGTGGCTGAGATGA 1530 50.26 MGKKGGSSWLTAVKRAFRSPTKDDDEKRREKRRWIFRKPTNQPPEPLAAHQPPSKPPALSTHSVALEDQKHALAVAEAAMVAARAAAQAVHLTRPARPGLDPHRLAAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKTTLQCMKALVRVQEKVLDHRMRLSLEGSRRSTFSDTNSVYESRNAQDVSERKTIKCVSREGSSITEDWDERAHTVEEVKAMLQYRRDAALNRDNILSHSFSQQIWRTGKSPSIGNQAELEEGQKWLDQWMAKKPWENRARASTDNRPQPLKTLEIDTSRPYSYLSPNNLHTTNYQTQSQRSNSLSSSSPLHRAHHHQFSITPSPSKSRPVQQVRSASPRYSREDRNQISHHITSQTPSLRTKHQHHKWGSGGGTSMPNYMAATESAKARVRSQSAPRQRPATPERERVGTARKRLSFPVPPDPYGRIVGCGVYGNSMKSPSFKSACGRYGGLEEQSNYSSCYTESHGGEVSPSSTTDLRRWLR 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4720957 4723264 + CaPI482276_06g002780.1 Cam06g0278 128578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0278 509 Pfam Protein of unknown function (DUF4005) 363 469 IPR025064 -
Cam06g0278 509 MobiDBLite consensus disorder prediction 484 509 - -
Cam06g0278 509 FunFam IQ-domain 11 102 153 - -
Cam06g0278 509 MobiDBLite consensus disorder prediction 283 443 - -
Cam06g0278 509 ProSiteProfiles IQ motif profile. 103 131 - -
Cam06g0278 509 Gene3D - 101 155 - -
Cam06g0278 509 ProSiteProfiles IQ motif profile. 127 154 - -
Cam06g0278 509 SMART iq_5 102 124 IPR000048 GO:0005515(InterPro)
Cam06g0278 509 SMART iq_5 125 146 IPR000048 GO:0005515(InterPro)
Cam06g0278 509 MobiDBLite consensus disorder prediction 304 363 - -
Cam06g0278 509 MobiDBLite consensus disorder prediction 402 425 - -
Cam06g0278 509 MobiDBLite consensus disorder prediction 17 38 - -
Cam06g0278 509 PANTHER IQ-DOMAIN 5-RELATED 9 438 - -
Cam06g0278 509 Pfam IQ calmodulin-binding motif 130 146 IPR000048 GO:0005515(InterPro)
Cam06g0278 509 Pfam IQ calmodulin-binding motif 106 124 IPR000048 GO:0005515(InterPro)
Cam06g0278 509 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0945 Cam-Chr5:8546707 Cam06g0278 Cam-Chr6:4720957 1.20E-17 dispersed
Cam06g0278 Cam-Chr6:4720957 Cam09g2081 Cam-Chr9:35375784 3.40E-29 dispersed
Cam05g0021 Cam-Chr5:711456 Cam06g0278 Cam-Chr6:4720957 3.10E-111 transposed
Cam01g0307 Cam-Chr1:3400418 Cam06g0278 Cam-Chr6:4720957 3.40E-10 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0278 - - - 0.0