Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0310 ATGAAGGCCATGCCCTTACCCTTCCCTTTTGAAGAGCTTCGTCCAAATGGGGTTTTGAATTTCACTTCTGTTTCTGATTCTCCGCCGCCGCCGACCTTGCTCCGCCGTCACAACCTCCGTGAGCACTGGAGTTGTACTGATAATACCAATCTGCTCAAAGAGATTTGCTATGTGGGTGCTGCTGAACCCACCTCTGTTCTCGATACTAGAAGAAGCCCAAGCCCTCCCACTTCCACTTCCACACTGTCTTCCTCTCTCGGCGGCGGCGGTGGTGGTGGTACCGCCTCCACCGACACGACCGTGGCGGCGCCGCCGTCTTCTCTCCCTGAAAACCCTTCTCCTTTAGACAAATGCGGTGGCGGTGGCGGCCTTGGAATTGATGATTGGGAGAGCGTTTTGCCGGAATCCCCTGGTCAAGGTCCCTCCATTCTTGGGTTAATTATGAGCGATGTTGAAGATCCATCTCTTGGATTGAATAAGCTCCTGCAGAGCGGCGGTGGCGGTGGCGGTGGCGGTGGTGGTGGTTCTCATCTGGACTTGGAATTTTCTGTCGATCATGGGTTGGTCTTTGAAGCCAATACTCTCGCCGGTGAATCCATTGTCGACCCATCTCTTCAAGGCCCATCTTGCTCCGATTTCCACAATGCTAGACTCGCGGCGGCGGTGTCGAACTCAAACGCCATGTTTTCCGGTGTGTTTCAGAATCAAAATCAGATGGTGGAAGGCGTTGACGAGAAGCCACAGATTTTTAATTCTTCCCAAGTTGTGATGAATCAAAATCAAACTCAGTTCACTCAGAATCCAGCTCTGTTTATGCCTCTTCCTTATGCCTCCCCTGTCCAAGACCACCATCAGAACCACCACCACCACCACCTCCTTGGTGGTGCGCCGCCCGCAAAGCGGTTCAATTCCGGTTCAATTGGGCCAAATTATCCAGTGAAATCCCCATTTCTGGATTCGGGTCAAGAAAATTTCAATCGTAGACAACAACAACAACAGCCCCAACAAGTTCAGTTGTTTCCTCATCATTCCCATCATCACAACCTTCCTCAGCAGCAGCAGAGGCCATCCATGGCGGCCTTAGCAAAACAGAAAATGGTGAATGAAGATATAGCGAATCAACAACTCCAACAGGGCATTTCCGACCAGCTATTCAAGGCCGTAGAGCTGATCGAAACAGGCAATTCAGTTCTCGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCTTCCCCCATTGGGAAGCCCTTTCAAAGGGCTGCTTTCTACTTCAAGGAGGCCTTGCAATTGCTCCTTCAAAACCCTTCAAACCCTTCCACCAATCCCAACCCTTCCCCTTTCTCCATCATTTTCAAAATCGCTGCTTACAAATCCTTCTCTGAAGTCTCCCCTGTTCTCCAATTTGCCAATTTCACCTCTAACCAAGCTCTCCTAGAAGCCTTCAATGGCTTCGATCGTATTCACATCATCGATTTCGACATTGGTTACGGTGGCCAATGGGCTTCTCTAATGCAAGAACTTGCTTTGAGAAGTAACACCACTGGAGGAGGACCCCCATTTCTCAGAATCACTGCCTTTGCTTCTACTTCCACACACGATGATTTTGAGCTCGGTTTCACTCAAGAAAACCTCAAGAATTTCGCAAACGATCTCAACATTGGATTCGAGCTTGAAGTCGTAAATGTAGAGTGTCTGAATTCTGGGTCTTGGCCTCTGCCACTCAATGTCTCTGAAGATGAAGCAATTGCAGTGAATCTCCCTGTGGGTTCATTCTTCAATTACTCACTTTCATTGCCAATGATTCTCCGTTTCATAAAACATCTTAACCCCAAAATCGTAGTGTCTGTGGATCGAGGTTGTAGCCGTATGGACGCGCCATTCCCACATCGAGTAATCAACGCTCTTCATTCATACTCTGCTTTGCTTGAATCCATGGAAGCTGTAACTATGAATATGGATACCCAATTGAAAATTGAAAGGTACTTGGTGCAACCATGTATTGAGAAAGTGGTAACAAATCCTCAATGTTCAAACGAAAGGGTTCCTCCATGGAAATCAGTGTTCTTATCATCTGGGTTTTGTCCATTGACATTCAGTAATTTCACGGAATCACAGGCAGAGTGTTTGCTGCAGCGGACGCCGGTTCAAGGATTTCATATCGACAAGAGACACTCCTCGCTTGTTCTTTGCTGGCATCGGAAGGAACTCGTTTCAATCTCTGCTTGGAGGTCTTAA 2238 48.3 MKAMPLPFPFEELRPNGVLNFTSVSDSPPPPTLLRRHNLREHWSCTDNTNLLKEICYVGAAEPTSVLDTRRSPSPPTSTSTLSSSLGGGGGGGTASTDTTVAAPPSSLPENPSPLDKCGGGGGLGIDDWESVLPESPGQGPSILGLIMSDVEDPSLGLNKLLQSGGGGGGGGGGGSHLDLEFSVDHGLVFEANTLAGESIVDPSLQGPSCSDFHNARLAAAVSNSNAMFSGVFQNQNQMVEGVDEKPQIFNSSQVVMNQNQTQFTQNPALFMPLPYASPVQDHHQNHHHHHLLGGAPPAKRFNSGSIGPNYPVKSPFLDSGQENFNRRQQQQQPQQVQLFPHHSHHHNLPQQQQRPSMAALAKQKMVNEDIANQQLQQGISDQLFKAVELIETGNSVLAQGILARLNHQLSSPIGKPFQRAAFYFKEALQLLLQNPSNPSTNPNPSPFSIIFKIAAYKSFSEVSPVLQFANFTSNQALLEAFNGFDRIHIIDFDIGYGGQWASLMQELALRSNTTGGGPPFLRITAFASTSTHDDFELGFTQENLKNFANDLNIGFELEVVNVECLNSGSWPLPLNVSEDEAIAVNLPVGSFFNYSLSLPMILRFIKHLNPKIVVSVDRGCSRMDAPFPHRVINALHSYSALLESMEAVTMNMDTQLKIERYLVQPCIEKVVTNPQCSNERVPPWKSVFLSSGFCPLTFSNFTESQAECLLQRTPVQGFHIDKRHSSLVLCWHRKELVSISAWRS 745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5179227 5181464 - CaPI482276_06g003100.1 Cam06g0310 128610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0310 745 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 351 743 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cam06g0310 745 MobiDBLite consensus disorder prediction 67 106 - -
Cam06g0310 745 ProSiteProfiles GRAS family profile. 371 744 IPR005202 -
Cam06g0310 745 Pfam GRAS domain family 382 744 IPR005202 -
Cam06g0310 745 MobiDBLite consensus disorder prediction 66 128 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0310 Cam-Chr6:5179227 Cam10g0267 Cam-Chr10:4551672 3.90E-138 dispersed
Cam06g0310 Cam-Chr6:5179227 Cam07g0925 Cam-Chr7:22823820 3.70E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52096 PF03514 GRAS 2.70E-98 CL0063 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0310 K27747 - csv:101214718 1301.96