Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0355 ATGGCTTCTTTTCATAGAAAGCAAGCTAACCATGCTTGCTTTCTCCTCCTTTTCCTCTTCTTTTCTCTGCCATCTCTCTCCTTCTCCATCTCGAAAGATGAAGCTTCGTATCTCACTCATCGTCAACTTTTGGCTCTAAAAGAACACGATCAACTCCCAGATGATTACAAATACCAACTTGACATTCCTGACACTTTTCCAAATGAAAGGTTGAAGAAGGCTTACGTAGCCCTTCAAGCTTGGAAACTGGCCATTTATTCTGACCCTCAAAACATGACAGCCAATTGGGTTGGCGCCGATGTATGTTCTTACACCGGCATCTACTGTGCTACGGCGCTTGACGACTCAGACATGGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGGTATTTGCCGCCGGAAATTGGCCTTATCACCGATTTGGCGCTCTTCCATATTAACTCTAATAGGTTTTGTGGGATCATTCCTTCCAGCTTCTCCAAGCTTGTTCTCATGTTCGAGTTCGATGTCAGCAACAACCGCTTCGTCGGCCATTTTCCTCACGTCGTCCTTGAATGGCCCACCGCTAAGTTCCTCGATCTTCGGTATAATGACTTCGAAGGAGAAGTCCCCTCCACACTCTTCACCAAGGAGTTCGATGCCATTTTCTTAAACAACAACAGATTCACCTCTCTAATTCCAGACACCATCGGAAACTCAACTGTCTCTGTTGTCTCTTTTGCCAACAATGAGTTCCATGGTTGCATTCCCAGCACTATTGGCCAAATGTCCAACCTCAACCAAATTCTCTTCATCGGCAACAAGCTCGACGGCTGTTTCCCACCCGAGATAGGAAACCTCGTCAATCTTACGGTCTTCGATGCCAGCGCCAATGGCTTCATTGGGCATCTGCCCGAAACCTTATCTGGCCTCCAAAATTTGGAGATCATGGACGTTAGCAACAATGAATTGAGGGGCTCTGTTCCTGGAGGCCTTTGCAAGTTGCCCAAATTGGCTAACTTCACTTTCTCCTTTAATTATTTTGATGGCGAAGATGCAACGTGTGTTGGAACTAAGGGATCAGAGAAACTCTTCGATGATGCTCAAAATTGTTTGGCGAATCAACCGGAGCAGAAAGATGCAAACAAATGTAGCGTTGTCCTAAAGAAATCTGTGGATTGTGGAAACTGTAGTGGTGGTGGTTCAGGTTCTCCCGGAGTGCCAATGACTCCTGAGGATCCATTTGATCAATCTCCATCGCCGAGATATAGGTCTCCACCACCTCCAATGACCTCTCCACCAGAATCGATCGACACCTCGGTCCCAGAAGTGGAGACTCCTTCTGCCCCATCATTGTCACCAACCTCTGCTCCGTTCTCACCACCTAACCTTGAAACCCCCAATCCATCCCCAGTTGACTCTCTTGAACCACCAGTTCACTCACCACCACCCCCAGTCCATTCTCCACCACCACCGGTCCATTCTCCTCCACCACCGGTTCATTCCCCACCACCTCCTGTCCACTCTCCTCCACCACCAGTCCACTCCCCACCACCCCCTGTTCACTCCCCACCACCACCTGTCTCCTCTCCTCCACCACCAGTTCATTCCCCACCTCCTCCTGTTCATTCCCCACCTCCTCCTGTTCATTCTCCACCTCCACCGGTCCACTCCCCACCTCCACCGGTCCACTCCCCACCACCACCGGTCCACTCCCCACCACCACCGGTCCACTCCCCACCTCCACCAGTCCACTCCCCACCACCCCCACCAGTTCATTCTCCACCTCCTCCGGTCCACTCTCCACCACCACCGGTCCACTCCCCACCTCCACCGGTCCACTCCCCACCACCCCCTGTCCACTCTCCACCACCCCCGGTCCACTCCCCACCCCCACCAGTTTACTCCCCACCTCCACCAGTCCACTCTCCACCACCACCGGTACACTCCCCACCCCCACCGGTTCATTCCCCACCCCCACCGGTTCATTCTCCACCGCCACCGGTCTACTCCCCACCGCCACCTGTCCATTCTCCACCACCACCTGTTTACTCCCCACCGCCACCAGTTCAATCTCCACCACCTCCAACTGCATCTTCTCCTCCTCCTCCTCCCGATTCTTCTCCACCGCCAACATTCGAGGACGTCATCCTCCCACCAAATATCGGCTTCCAATACACATCACCACCTCCACCACAGTTTCCTGGCTATTAA 2205 52.47 MASFHRKQANHACFLLLFLFFSLPSLSFSISKDEASYLTHRQLLALKEHDQLPDDYKYQLDIPDTFPNERLKKAYVALQAWKLAIYSDPQNMTANWVGADVCSYTGIYCATALDDSDMEVVAGIDLNHGDIAGYLPPEIGLITDLALFHINSNRFCGIIPSSFSKLVLMFEFDVSNNRFVGHFPHVVLEWPTAKFLDLRYNDFEGEVPSTLFTKEFDAIFLNNNRFTSLIPDTIGNSTVSVVSFANNEFHGCIPSTIGQMSNLNQILFIGNKLDGCFPPEIGNLVNLTVFDASANGFIGHLPETLSGLQNLEIMDVSNNELRGSVPGGLCKLPKLANFTFSFNYFDGEDATCVGTKGSEKLFDDAQNCLANQPEQKDANKCSVVLKKSVDCGNCSGGGSGSPGVPMTPEDPFDQSPSPRYRSPPPPMTSPPESIDTSVPEVETPSAPSLSPTSAPFSPPNLETPNPSPVDSLEPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVSSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVHSPPPPVYSPPPPVQSPPPPTASSPPPPPDSSPPPTFEDVILPPNIGFQYTSPPPPQFPGY 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5672638 5674842 - CaPI482276_06g003550.1 Cam06g0355 128655

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0355 734 PRINTS Proline rich extensin signature 414 426 - -
Cam06g0355 734 PRINTS Proline rich extensin signature 471 488 - -
Cam06g0355 734 PRINTS Proline rich extensin signature 451 467 - -
Cam06g0355 734 PRINTS Proline rich extensin signature 426 447 - -
Cam06g0355 734 PRINTS Proline rich extensin signature 489 514 - -
Cam06g0355 734 MobiDBLite consensus disorder prediction 396 734 - -
Cam06g0355 734 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 13 731 IPR051582 -
Cam06g0355 734 SUPERFAMILY L domain-like 83 351 - -
Cam06g0355 734 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 254 348 - -
Cam06g0355 734 Gene3D Ribonuclease Inhibitor 244 385 IPR032675 -
Cam06g0355 734 MobiDBLite consensus disorder prediction 409 432 - -
Cam06g0355 734 FunFam Leucine-rich repeat extensin-like protein 1 75 236 - -
Cam06g0355 734 MobiDBLite consensus disorder prediction 433 450 - -
Cam06g0355 734 Pfam Leucine Rich Repeat 310 332 IPR001611 GO:0005515(InterPro)
Cam06g0355 734 Gene3D Ribonuclease Inhibitor 73 243 IPR032675 -
Cam06g0355 734 MobiDBLite consensus disorder prediction 451 713 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0355 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2147 Cam-Chr5:29892904 Cam06g0355 Cam-Chr6:5672638 3.60E-37 dispersed
Cam06g0355 Cam-Chr6:5672638 Cam06g0358 Cam-Chr6:5694669 6.30E-08 dispersed
Cam06g0355 Cam-Chr6:5672638 Cam06g0356 Cam-Chr6:5683352 6.30E-08 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam05g0566 . 32 363 Leucine-rich Repeat extension Gene Families AT1G62440 63.4 3.5e-49 193.7
Cam07g0243 . 46 375 Leucine-rich Repeat extension Gene Families AT1G62440 58.5 8.5e-43 172.6
Cam11g0299 . 72 423 Leucine-rich Repeat extension Gene Families AT1G62440 61.6 1.1e-42 172.2
Cam05g2147 . 73 266 Leucine-rich Repeat extension Gene Families AT1G62440 63.4 1.2e-41 168.7
Cam06g1139 . 61 233 Leucine-rich Repeat extension Gene Families AT1G62440 68.8 7.9e-41 166.0
Cam06g1139 . 15 405 Leucine-rich Repeat extension Gene Families AT4G13340 74.6 7.4e-68 255.8
Cam11g0299 . 37 423 Leucine-rich Repeat extension Gene Families AT4G13340 74.0 4.8e-67 253.1
Cam05g0566 . 18 365 Leucine-rich Repeat extension Gene Families AT4G13340 69.9 2.9e-56 217.2
Cam05g2147 . 73 260 Leucine-rich Repeat extension Gene Families AT4G13340 70.2 1.5e-44 178.3
Cam07g0243 . 39 376 Leucine-rich Repeat extension Gene Families AT4G13340 62.2 8.2e-43 172.6
Cam06g0355 . 15 225 Leucine-rich Repeat extension Gene Families AT4G13340 52.5 1.6e-38 158.3
Cam06g0356 . 34 225 Leucine-rich Repeat extension Gene Families AT4G13340 56.8 1.6e-38 158.3
Cam06g0358 . 34 225 Leucine-rich Repeat extension Gene Families AT4G13340 56.8 1.6e-38 158.3
Cam06g0359 . 34 225 Leucine-rich Repeat extension Gene Families AT4G13340 56.8 1.6e-38 158.3
Cam06g1139 . 24 400 Leucine-rich Repeat extension Gene Families AT3G24480 74.6 6.4e-73 271.9
Cam11g0299 . 37 419 Leucine-rich Repeat extension Gene Families AT3G24480 73.0 7.1e-72 268.5
Cam05g0566 . 25 365 Leucine-rich Repeat extension Gene Families AT3G24480 67.0 1.0e-54 211.5
Cam05g2147 . 73 260 Leucine-rich Repeat extension Gene Families AT3G24480 68.6 8.8e-46 181.8
Cam07g0243 . 46 376 Leucine-rich Repeat extension Gene Families AT3G24480 60.5 4.4e-45 179.5
Cam06g0356 . 34 225 Leucine-rich Repeat extension Gene Families AT3G24480 51.8 3.0e-38 156.8
Cam06g0358 . 34 225 Leucine-rich Repeat extension Gene Families AT3G24480 51.8 3.0e-38 156.8
Cam06g0359 . 34 225 Leucine-rich Repeat extension Gene Families AT3G24480 51.8 3.0e-38 156.8
Cam05g0566 . 15 364 Leucine-rich Repeat extension Gene Families AT3G22800 72.1 9.8e-71 264.6
Cam07g0243 . 46 375 Leucine-rich Repeat extension Gene Families AT3G22800 64.4 1.6e-49 194.1
Cam06g1139 . 73 401 Leucine-rich Repeat extension Gene Families AT3G22800 62.5 8.4e-38 155.2
Cam06g1139 . 47 405 Leucine-rich Repeat extension Gene Families AT5G25550 61.2 8.2e-40 161.8
Cam11g0299 . 58 417 Leucine-rich Repeat extension Gene Families AT5G25550 62.4 1.2e-38 157.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000785 1 2 1 1 0 5 5 5 5 1 2 5 5 4 2 4 4 4 3 4 4 3 2 4 3 3 5 2 2 1 92