Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0356 ATGGCTTCTCTTCATAGAAAGCAAGCTAACCATGCTTGCTTTCTCCTCCTCTTCCTCTTCTTGTCTCTGCCATCTCTCTCCGTCTCCATCTCAGAAGCCGAAGCTTCGTATCTCACTCGTCGTCAACTTTTGGCTCTAAAAGAACACGATCAACTCCCAGATGATTACAAATACCAACTTGACATTCCTGACACTTTTCCAAATGAAAGGTTGAAGAAGGCTTATGTAGCCCTTCAAGCTTGGAAATTGGCCATTTATTCTGACCCTCAGAACATGACAGCCAATTGGGTTGGCGCCGATGTCTGTTCTTACACCGGCATCTACTGTACTACGGCGCTTGACAACTCAGACATGGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGGTATTTGCCGCCAGAAATTGGCCTCATCACCGATTTGGCTCTCTTCCATATTAACTCTAACAGGTTCTGTGGGATCATTCCTTCCAGCTTCTCCAAGCTTGTTCTCATGTTCGAGTTCGATGTCAGCAACAACCGCTTCGTCGGCCATTTTCCTCACGTCGTCCTTGAATGGCCCACCGCTAAGTTCCTCGATCTCAGGTATAATGACTTCGAAGGAGAAATCCCCTCCACACTCTTCACCAAGGAGTTCGATGCCATTTTCTTAAACAACAACAGATTCACCTCTCTAATTCCAGATACCATCGGAAACTCAACCGTCTCCGTTGTCTCCTTTGCCAACAATGAGTTCCATGGCTGCATTCCCAGCACCATTGGCCAAATGTCCAACCTCAACCAAATTCTCTTCATCGGCAACAAGCTTGGCGGCTGTTTCCCACCCGAGATCGGAAACCTCGTCAATCTTACGGTCTTCGATGCGAGCGCCAATGGCTTCGTCGGCCAGCTGCCCGAAACCTTATCGGGCCTCCAAAATTTGGAGATTATGGACGTTAGCAACAATGAATTGAGGGGCTCTGTTCCTGGAGGCTTTTGCAAGTTGCCCAAATTAGCAAACTTCACTTTCTCGTTTAATTATTTTGACGGCAAAGATGCAGCGTGTGTTGGAACTAAGGGATCAGAGAAACTCTTTGATGATGCTCAAAATTGTTTGGCCAATCAACCGGAGCAGAAAGATGCAAACAAATGTAGCGTTGTCCTAAAGAAATCAGTGGACTGTGGAAACTGTGGTGGTGGTGGTTCAGGTTCTCCCGAAGTGCCAATGACTCCTGAAGATCCATTTGATCAATCTCCATCGCCGAGATATAGGTCTCCACCACCTCCAGTGACCTCTCCACCTGAATCGATCGACACCTCGGTCCCAGAAGTGGGGACTCCTCCTTCTCCAAGTGAGACTTCTATTACATCATCACCACCGTCTCCAATTGAGTATTCACCACCAACCTCTGCACCACAATTGTCACCAACCTCTGCTCCATCATTATCACCAACCTCTGCTCCGATCTCACCACCTACCCTTGAAACCCCCAGTCCATCCCCAGCTGAATCTCCCGAACCACTAATTCATTCACCACCACCCCCAGTCCATTCCCCGCCACCACCGGTCCATTCTCCTCCACCACCGGTTCATTCCCCACCACCTCCTGTCCACTCTCCTCCACCACCAGTCCATTCTCCTCCACCACCGGTTCATTCCCCACCACCTCCTGTCCACTCTCCTCCACCACCGGTCCATTCTCCACCACCTCCTGTCCACTCTCCTCCACCACCAGTCCACTCCCCACCACCTCCTATTCACTCCCCACCACCACCTGTCTCCTCTCCTCCACCACCAGTTCATTCCCCACCTCCTCCTGTCCACTCTCCACCACCACCTATCCACTCCCCACCACCCCCGGTCCACTCCCCACCACCCCCGGTCCACTCACCACCACCCCCCGTCCACTCACCCCCACCCCCCGTCCACTCTCCACCCCCACCCGTCCACTCTCCACCCCCACCAGTTTACTCCCCACCCCCACCAGTTCATTCTCCACCCCCACCAGTTCACTCCCCACCCCCACCAGTCCATTCTCCACCACCGCCTGTTTACTCCCCACCGCCACCAGTCCAATCTCCACCACCTCCGACTGCATCTCCACCTCCTCCTCCTCCCGATTCTTCTCCACCGCCATCATTCGAGGACGTCATCCTCCCGCCAAATATCGGCTTCCAATATGCATCACCACCTCCACCACAGTTTCCTGGCTATTGA 2208 52.36 MASLHRKQANHACFLLLFLFLSLPSLSVSISEAEASYLTRRQLLALKEHDQLPDDYKYQLDIPDTFPNERLKKAYVALQAWKLAIYSDPQNMTANWVGADVCSYTGIYCTTALDNSDMEVVAGIDLNHGDIAGYLPPEIGLITDLALFHINSNRFCGIIPSSFSKLVLMFEFDVSNNRFVGHFPHVVLEWPTAKFLDLRYNDFEGEIPSTLFTKEFDAIFLNNNRFTSLIPDTIGNSTVSVVSFANNEFHGCIPSTIGQMSNLNQILFIGNKLGGCFPPEIGNLVNLTVFDASANGFVGQLPETLSGLQNLEIMDVSNNELRGSVPGGFCKLPKLANFTFSFNYFDGKDAACVGTKGSEKLFDDAQNCLANQPEQKDANKCSVVLKKSVDCGNCGGGGSGSPEVPMTPEDPFDQSPSPRYRSPPPPVTSPPESIDTSVPEVGTPPSPSETSITSSPPSPIEYSPPTSAPQLSPTSAPSLSPTSAPISPPTLETPSPSPAESPEPLIHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPIHSPPPPVSSPPPPVHSPPPPVHSPPPPIHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVQSPPPPTASPPPPPPDSSPPPSFEDVILPPNIGFQYASPPPPQFPGY 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5683352 5685559 + CaPI482276_06g003560.1 Cam06g0356 128656

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0356 735 Gene3D Ribonuclease Inhibitor 237 353 IPR032675 -
Cam06g0356 735 MobiDBLite consensus disorder prediction 433 457 - -
Cam06g0356 735 FunFam Leucine-rich repeat extensin-like protein 1 75 236 - -
Cam06g0356 735 PRINTS Pistil-specific extensin-like signature 485 508 IPR003882 -
Cam06g0356 735 PRINTS Pistil-specific extensin-like signature 520 538 IPR003882 -
Cam06g0356 735 MobiDBLite consensus disorder prediction 482 714 - -
Cam06g0356 735 Pfam Leucine Rich Repeat 310 332 IPR001611 GO:0005515(InterPro)
Cam06g0356 735 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 13 639 IPR051582 -
Cam06g0356 735 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 254 348 - -
Cam06g0356 735 MobiDBLite consensus disorder prediction 467 481 - -
Cam06g0356 735 MobiDBLite consensus disorder prediction 397 735 - -
Cam06g0356 735 MobiDBLite consensus disorder prediction 409 432 - -
Cam06g0356 735 SUPERFAMILY L domain-like 83 348 - -
Cam06g0356 735 Gene3D Ribonuclease Inhibitor 72 236 IPR032675 -
Cam06g0356 735 Pfam Leucine rich repeat N-terminal domain 77 110 IPR013210 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0356 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0356 Cam-Chr6:5683352 Cam06g0358 Cam-Chr6:5694669 5.70E-09 dispersed
Cam06g0355 Cam-Chr6:5672638 Cam06g0356 Cam-Chr6:5683352 6.30E-08 tandem
Cam06g0356 Cam-Chr6:5683352 Cam06g0357 Cam-Chr6:5687103 3.40E-30 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam05g0566 . 32 363 Leucine-rich Repeat extension Gene Families AT1G62440 63.4 3.5e-49 193.7
Cam07g0243 . 46 375 Leucine-rich Repeat extension Gene Families AT1G62440 58.5 8.5e-43 172.6
Cam11g0299 . 72 423 Leucine-rich Repeat extension Gene Families AT1G62440 61.6 1.1e-42 172.2
Cam05g2147 . 73 266 Leucine-rich Repeat extension Gene Families AT1G62440 63.4 1.2e-41 168.7
Cam06g1139 . 61 233 Leucine-rich Repeat extension Gene Families AT1G62440 68.8 7.9e-41 166.0
Cam06g1139 . 15 405 Leucine-rich Repeat extension Gene Families AT4G13340 74.6 7.4e-68 255.8
Cam11g0299 . 37 423 Leucine-rich Repeat extension Gene Families AT4G13340 74.0 4.8e-67 253.1
Cam05g0566 . 18 365 Leucine-rich Repeat extension Gene Families AT4G13340 69.9 2.9e-56 217.2
Cam05g2147 . 73 260 Leucine-rich Repeat extension Gene Families AT4G13340 70.2 1.5e-44 178.3
Cam07g0243 . 39 376 Leucine-rich Repeat extension Gene Families AT4G13340 62.2 8.2e-43 172.6
Cam06g0355 . 15 225 Leucine-rich Repeat extension Gene Families AT4G13340 52.5 1.6e-38 158.3
Cam06g0356 . 34 225 Leucine-rich Repeat extension Gene Families AT4G13340 56.8 1.6e-38 158.3
Cam06g0358 . 34 225 Leucine-rich Repeat extension Gene Families AT4G13340 56.8 1.6e-38 158.3
Cam06g0359 . 34 225 Leucine-rich Repeat extension Gene Families AT4G13340 56.8 1.6e-38 158.3
Cam06g1139 . 24 400 Leucine-rich Repeat extension Gene Families AT3G24480 74.6 6.4e-73 271.9
Cam11g0299 . 37 419 Leucine-rich Repeat extension Gene Families AT3G24480 73.0 7.1e-72 268.5
Cam05g0566 . 25 365 Leucine-rich Repeat extension Gene Families AT3G24480 67.0 1.0e-54 211.5
Cam05g2147 . 73 260 Leucine-rich Repeat extension Gene Families AT3G24480 68.6 8.8e-46 181.8
Cam07g0243 . 46 376 Leucine-rich Repeat extension Gene Families AT3G24480 60.5 4.4e-45 179.5
Cam06g0356 . 34 225 Leucine-rich Repeat extension Gene Families AT3G24480 51.8 3.0e-38 156.8
Cam06g0358 . 34 225 Leucine-rich Repeat extension Gene Families AT3G24480 51.8 3.0e-38 156.8
Cam06g0359 . 34 225 Leucine-rich Repeat extension Gene Families AT3G24480 51.8 3.0e-38 156.8
Cam05g0566 . 15 364 Leucine-rich Repeat extension Gene Families AT3G22800 72.1 9.8e-71 264.6
Cam07g0243 . 46 375 Leucine-rich Repeat extension Gene Families AT3G22800 64.4 1.6e-49 194.1
Cam06g1139 . 73 401 Leucine-rich Repeat extension Gene Families AT3G22800 62.5 8.4e-38 155.2
Cam06g1139 . 47 405 Leucine-rich Repeat extension Gene Families AT5G25550 61.2 8.2e-40 161.8
Cam11g0299 . 58 417 Leucine-rich Repeat extension Gene Families AT5G25550 62.4 1.2e-38 157.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000785 1 2 1 1 0 5 5 5 5 1 2 5 5 4 2 4 4 4 3 4 4 3 2 4 3 3 5 2 2 1 92