Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0358 ATGGCTTCTCTTCATAGAAAGCAAGCTAACCATGCTTGCTTTCTCCTCCTCTTCCTCTTCTTGTCTCTGCCATCTCTCTCCGTCTCCATCTCAGAAGCCGAAGCTTCGTATCTCACTCGTCGTCAACTTTTGGCTCTAAAAGAACACGATCAACTCCCAGATGATTACAAATACCAACTTGACATTCCTGACACTTTTCCAAATGAAAGGTTGAAGAAGGCTTATGTAGCCCTTCAAGCTTGGAAATTGGCCATTTATTCTGACCCTCAGAACATGACAGCCAATTGGGTTGGCGCCGATGTCTGTTCTTACACCGGCATCTACTGTACTACGGCGCTTGACAACTCAGACATGGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGGTATTTGCCGCCAGAAATTGGCCTCATCACCGATTTGGCTCTCTTCCATATTAACTCTAACAGGTTCTGTGGGATCATTCCTTCCAGCTTCTCCAAGCTTGTTCTCATGTTCGAGTTCGATGTCAGCAACAACCGCTTCGTCGGCCATTTTCCTCACGTCGTCCTTGAATGGCCCACCGCTAAGTTCCTCGATCTCAGGTATAATGACTTCGAAGGAGAAATCCCCTCCACACTCTTCACCAAGGAGTTCGATGCCATTTTCTTAAACAACAACAGATTCACCTCTCTAATTCCAGATACCATCGGAAACTCAACCGTCTCCGTTGTCTCCTTTGCCAACAATGAGTTCCATGGCTGCATTCCCAGCACCATTGGCCAAATGTCCAACCTCAACCAAATTCTCTTCATCGGCAACAAGCTTGGCGGCTGTTTCCCACCCGAGATCGGAAACCTCGTCAATCTTACGGTCTTCGATGCGAGCGCCAATGGCTTCGTCGGCCAGCTGCCCGAAACCTTATCGGGCCTCCAAAATTTGGAGATTATGGACGTTAGCAACAATGAATTGAGGGGCTCTGTTCCTGGAGGCTTTTGCAAGTTGCCCAAATTAGCAAACTTCACTTTCTCGTTTAATTATTTTGACGGCAAAGATGCAGCGTGTGTTGGAACTAAGGGATCAGAGAAACTCTTTGATGATGCTCAAAATTGTTTGGCCAATCAACCGGAGCAGAAAGATGCAAACAAATGTAGCGTTGTCCTAAAGAAATCAGTGGACTGTGGAAACTGTGGTGGTGGTGGTTCAGGTTCTCCCGAAGTGCCAATGACTCCTGAAGATCCATTTGATCAATCTCCATCGCCGAGATATAGGTCTCCACCACCTCCAGTGACCTCTCCACCTGAATCGATCGACACCTCGGTCCCAGAAGTGGGGACTCCTCCTTCTCCAAGTGAGACTTCTATTACATCATCACCACCGTCTCCAATTGAGTATTCACCACCAACCTCTGCACCACAATTGTCACCAACCTCTGCTCCATCATTATCACCAACCTCTGCTCCGATCTCACCACCTACCCTTGAAACCCCCAGTCCATCCCCAGCTGAATCTCCCGAACCACTAATTCATTCACCACCACCCCCAGTCCATTCCCCGCCACCACCGGTCCATTCTCCTCCACCACCGGTTCATTCCCCACCACCTCCTGTCCACTCTCCTCCACCACCAGTCCATTCTCCTCCACCACCGGTTCATTCCCCACCACCTCCTGTCCACTCTCCTCCACCACCGGTCCATTCTCCACCACCTCCTGTCCACTCTCCTCCACCACCAGTCCACTCCCCACCACCTCCTATTCACTCCCCACCACCACCTGTCTCCTCTCCTCCACCACCAGTTCATTCCCCACCTCCTCCTGTCCACTCTCCACCACCACCTATCCACTCCCCACCACCCCCGGTCCACTCCCCACCACCCCCGGTCCACTCACCACCACCCCCCGTCCACTCACCCCCACCCCCCGTCCACTCTCCACCCCCACCCGTCCACTCTCCACCCCCACCAGTTTACTCCCCACCCCCACCAGTTCATTCTCCACCCCCACCAGTTCACTCCCCACCCCCACCAGTCCATTCTCCACCACCGCCTGTTTACTCCCCACCGCCACCAGTCCAATCTCCACCACCTCCGACTGCATCTCCACCTCCTCCTCCTCCCGATTCTTCTCCACCGCCATCATTCGAGGACGTCATCCTCCCGCCAAATATCGGCTTCCAATATGCATCACCACCTCCACCACAGTTTCCTGGCTATTGA 2208 52.36 MASLHRKQANHACFLLLFLFLSLPSLSVSISEAEASYLTRRQLLALKEHDQLPDDYKYQLDIPDTFPNERLKKAYVALQAWKLAIYSDPQNMTANWVGADVCSYTGIYCTTALDNSDMEVVAGIDLNHGDIAGYLPPEIGLITDLALFHINSNRFCGIIPSSFSKLVLMFEFDVSNNRFVGHFPHVVLEWPTAKFLDLRYNDFEGEIPSTLFTKEFDAIFLNNNRFTSLIPDTIGNSTVSVVSFANNEFHGCIPSTIGQMSNLNQILFIGNKLGGCFPPEIGNLVNLTVFDASANGFVGQLPETLSGLQNLEIMDVSNNELRGSVPGGFCKLPKLANFTFSFNYFDGKDAACVGTKGSEKLFDDAQNCLANQPEQKDANKCSVVLKKSVDCGNCGGGGSGSPEVPMTPEDPFDQSPSPRYRSPPPPVTSPPESIDTSVPEVGTPPSPSETSITSSPPSPIEYSPPTSAPQLSPTSAPSLSPTSAPISPPTLETPSPSPAESPEPLIHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPIHSPPPPVSSPPPPVHSPPPPVHSPPPPIHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVQSPPPPTASPPPPPPDSSPPPSFEDVILPPNIGFQYASPPPPQFPGY 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5694669 5696876 + CaPI482276_06g003580.1 Cam06g0358 128658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0358 735 Gene3D Ribonuclease Inhibitor 237 353 IPR032675 -
Cam06g0358 735 MobiDBLite consensus disorder prediction 433 457 - -
Cam06g0358 735 FunFam Leucine-rich repeat extensin-like protein 1 75 236 - -
Cam06g0358 735 PRINTS Pistil-specific extensin-like signature 485 508 IPR003882 -
Cam06g0358 735 PRINTS Pistil-specific extensin-like signature 520 538 IPR003882 -
Cam06g0358 735 MobiDBLite consensus disorder prediction 482 714 - -
Cam06g0358 735 Pfam Leucine Rich Repeat 310 332 IPR001611 GO:0005515(InterPro)
Cam06g0358 735 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 13 639 IPR051582 -
Cam06g0358 735 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 254 348 - -
Cam06g0358 735 MobiDBLite consensus disorder prediction 467 481 - -
Cam06g0358 735 MobiDBLite consensus disorder prediction 397 735 - -
Cam06g0358 735 MobiDBLite consensus disorder prediction 409 432 - -
Cam06g0358 735 SUPERFAMILY L domain-like 83 348 - -
Cam06g0358 735 Gene3D Ribonuclease Inhibitor 72 236 IPR032675 -
Cam06g0358 735 Pfam Leucine rich repeat N-terminal domain 77 110 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0355 Cam-Chr6:5672638 Cam06g0358 Cam-Chr6:5694669 6.30E-08 dispersed
Cam06g0356 Cam-Chr6:5683352 Cam06g0358 Cam-Chr6:5694669 5.70E-09 dispersed
Cam06g0358 Cam-Chr6:5694669 Cam06g1139 Cam-Chr6:21748379 1.20E-38 dispersed
Cam06g0357 Cam-Chr6:5687103 Cam06g0358 Cam-Chr6:5694669 9.10E-06 tandem
Cam06g0358 Cam-Chr6:5694669 Cam06g0359 Cam-Chr6:5698386 7.50E-09 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0358 - - - 0.0