Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0359 ATGGCTTCTCTTCATAGAAAGCAAGCTAACCATGCTTGCTTTCTCCTCCTCTTCCTCTTCTTGTCTCTGCCATCTCTCTCCGTCTCCATCTCAGAAGCCGAAGCTTCGTATCTCACTCGTCGTCAACTTTTGGCTCTAAAAGAACACGATCAACTCCCAGATGATTACAAATACCAACTTGACATTCCTGACACTTTTCCAAATGAAAGGTTGAAGAAGGCTTATGTAGCCCTTCAAGCTTGGAAATTGGCCATTTATTCTGACCCTCAGAACATGACAGCCAATTGGGTTGGCGCCGATGTCTGTTCTTACACCGGCATCTACTGTACTACGGCGCTTGACAACTCAGACATGGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGGTATTTGCCGCCAGAAATTGGCCTCATCACCGATTTGGCTCTCTTCCATATTAACTCTAACAGGTTCTGTGGGATCATTCCTTCCAGCTTCTCCAAGCTTGTTCTCATGTTCGAGTTCGATGTCAGCAACAACCGCTTCGTCGGCCATTTTCCTCACGTCGTCCTTGAATGGCCCACCGCTAAGTTCCTCGATCTCAGGTATAATGACTTCGAAGGAGAAATCCCCTCCACACTCTTCACCAAGGAGTTCGATGCCATTTTCTTAAACAACAACAGATTCACCTCTCTAATTCCAGATACCATCGGAAACTCAACCGTCTCCGTTGTCTCCTTTGCCAACAATGAGTTCCATGGCTGCATTCCCAGCACCATTGGCCAAATGTCCAACCTCAACCAAATTCTCTTCATCGGCAACAAGCTTGGCGGCTGTTTCCCACCCGAGATCGGAAACCTCGTCAATCTTACGGTCTTCGATGCGAGCGCCAATGGCTTCGTCGGCCAGCTGCCCGAAACCTTATCGGGCCTCCAAAATTTGGAGATTATGGACGTTAGCAACAATGAATTGAGGGGCTCTGTTCCTGGAGGCTTTTGCAAGTTGCCCAAATTAGCAAACTTCACTTTCTCGTTTAATTATTTTGACGGCAAAGATGCAGCGTGTGTTGGAACTAAGGGATCAGAGAAACTCTTTGATGATGCTCAAAATTGTTTGGCCAATCAACCGGAGCAAAAAGATGCAAACAAATGTAGCGTTGTCCTAAAGAAATCAGTGGACTGTGGAAACTGTGGTGGTGGTGGTTCAGGTTCTCCCGAAGTGCCAATGACTCCTGAAGATCCATTTGATCAATCTCCATCGCCGAGATATAGGTCTCCACCACCTCCAGTGACCTCTCCACCTGAATCGATCGTATCACCAGTTCATTCACCACCACATCCCGTTCATTCACCACCACCCCCAGTCCATTCCCCACCACCACCAATTCATTCCCCACCACCTCCTATTAACTCGCCTCCACCACCGGTCCATTCTCCTCCACCGCCAGTCCACTCCCCTCCACCTCCTGTTCACTCCCCACCACCACCTGTCTCCTCTCCTCCACCACCAGTTCACTCCCCACCTCCACCTGTGTACTCTCCACCACCACCTCCTGTTCACTCCCCACCACCACCTGTCTCCTCTCCTCCACCACCAGTTCACTCCCCACCTCCACCTGTGTACTCTCCACCACCACCTCCTGTTCACTCCCCACCACCACCTGTGTACTCTCCACCACCACCTCCTGTTCACTCCCCACCACCACCTGTCTCCTCTCCTCCACCACCAGTTCACTCCCCACCTCCACCTGTGTACTCTCCACCACCACCGGTCCACTCCCCACCTCCTCCTATCTACTCTCCACCTCCACCGGTCCACTCCCCACCTCCACCAGTCCACTCCCCACCTCCACCGGTCCACTCTCCACCGCCACCGATCTACTCCCCACCACCCCCGGTCCATTCTCCACCAACTCCTGTTTACTCCCCACCGCCACCAGTCCAATCTCCACCACCTCCAACTGGATCTCCTCCTCCTCCTCCTCCCGATTCTTCTCCACCGCCATCATTCGAGGACATCATCCTCCCCCCAAATATCGGCTTCCAATATGCATCACCACCTCCACCACAATTCCCTGGCTACTGA 2076 51.93 MASLHRKQANHACFLLLFLFLSLPSLSVSISEAEASYLTRRQLLALKEHDQLPDDYKYQLDIPDTFPNERLKKAYVALQAWKLAIYSDPQNMTANWVGADVCSYTGIYCTTALDNSDMEVVAGIDLNHGDIAGYLPPEIGLITDLALFHINSNRFCGIIPSSFSKLVLMFEFDVSNNRFVGHFPHVVLEWPTAKFLDLRYNDFEGEIPSTLFTKEFDAIFLNNNRFTSLIPDTIGNSTVSVVSFANNEFHGCIPSTIGQMSNLNQILFIGNKLGGCFPPEIGNLVNLTVFDASANGFVGQLPETLSGLQNLEIMDVSNNELRGSVPGGFCKLPKLANFTFSFNYFDGKDAACVGTKGSEKLFDDAQNCLANQPEQKDANKCSVVLKKSVDCGNCGGGGSGSPEVPMTPEDPFDQSPSPRYRSPPPPVTSPPESIVSPVHSPPHPVHSPPPPVHSPPPPIHSPPPPINSPPPPVHSPPPPVHSPPPPVHSPPPPVSSPPPPVHSPPPPVYSPPPPPVHSPPPPVSSPPPPVHSPPPPVYSPPPPPVHSPPPPVYSPPPPPVHSPPPPVSSPPPPVHSPPPPVYSPPPPVHSPPPPIYSPPPPVHSPPPPVHSPPPPVHSPPPPIYSPPPPVHSPPTPVYSPPPPVQSPPPPTGSPPPPPPDSSPPPSFEDIILPPNIGFQYASPPPPQFPGY 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5698386 5700461 + CaPI482276_06g003590.1 Cam06g0359 128659

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0359 691 Gene3D Ribonuclease Inhibitor 237 353 IPR032675 -
Cam06g0359 691 MobiDBLite consensus disorder prediction 409 670 - -
Cam06g0359 691 FunFam Leucine-rich repeat extensin-like protein 1 75 236 - -
Cam06g0359 691 FunFam Leucine-rich repeat receptor protein kinase EMS1 237 327 - -
Cam06g0359 691 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 13 531 IPR051582 -
Cam06g0359 691 SUPERFAMILY L domain-like 83 348 - -
Cam06g0359 691 Gene3D Ribonuclease Inhibitor 72 236 IPR032675 -
Cam06g0359 691 PRINTS Proline rich extensin signature 402 418 - -
Cam06g0359 691 PRINTS Proline rich extensin signature 437 458 - -
Cam06g0359 691 PRINTS Proline rich extensin signature 458 474 - -
Cam06g0359 691 PRINTS Proline rich extensin signature 475 492 - -
Cam06g0359 691 Pfam Leucine Rich Repeat 310 332 IPR001611 GO:0005515(InterPro)
Cam06g0359 691 MobiDBLite consensus disorder prediction 397 691 - -
Cam06g0359 691 Pfam Leucine rich repeat N-terminal domain 77 110 IPR013210 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0359 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0357 Cam-Chr6:5687103 Cam06g0359 Cam-Chr6:5698386 3.10E-06 dispersed
Cam06g0359 Cam-Chr6:5698386 Cam06g1139 Cam-Chr6:21748379 1.10E-38 dispersed
Cam06g0358 Cam-Chr6:5694669 Cam06g0359 Cam-Chr6:5698386 7.50E-09 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam05g0566 . 32 363 Leucine-rich Repeat extension Gene Families AT1G62440 63.4 3.5e-49 193.7
Cam07g0243 . 46 375 Leucine-rich Repeat extension Gene Families AT1G62440 58.5 8.5e-43 172.6
Cam11g0299 . 72 423 Leucine-rich Repeat extension Gene Families AT1G62440 61.6 1.1e-42 172.2
Cam05g2147 . 73 266 Leucine-rich Repeat extension Gene Families AT1G62440 63.4 1.2e-41 168.7
Cam06g1139 . 61 233 Leucine-rich Repeat extension Gene Families AT1G62440 68.8 7.9e-41 166.0
Cam06g1139 . 15 405 Leucine-rich Repeat extension Gene Families AT4G13340 74.6 7.4e-68 255.8
Cam11g0299 . 37 423 Leucine-rich Repeat extension Gene Families AT4G13340 74.0 4.8e-67 253.1
Cam05g0566 . 18 365 Leucine-rich Repeat extension Gene Families AT4G13340 69.9 2.9e-56 217.2
Cam05g2147 . 73 260 Leucine-rich Repeat extension Gene Families AT4G13340 70.2 1.5e-44 178.3
Cam07g0243 . 39 376 Leucine-rich Repeat extension Gene Families AT4G13340 62.2 8.2e-43 172.6
Cam06g0355 . 15 225 Leucine-rich Repeat extension Gene Families AT4G13340 52.5 1.6e-38 158.3
Cam06g0356 . 34 225 Leucine-rich Repeat extension Gene Families AT4G13340 56.8 1.6e-38 158.3
Cam06g0358 . 34 225 Leucine-rich Repeat extension Gene Families AT4G13340 56.8 1.6e-38 158.3
Cam06g0359 . 34 225 Leucine-rich Repeat extension Gene Families AT4G13340 56.8 1.6e-38 158.3
Cam06g1139 . 24 400 Leucine-rich Repeat extension Gene Families AT3G24480 74.6 6.4e-73 271.9
Cam11g0299 . 37 419 Leucine-rich Repeat extension Gene Families AT3G24480 73.0 7.1e-72 268.5
Cam05g0566 . 25 365 Leucine-rich Repeat extension Gene Families AT3G24480 67.0 1.0e-54 211.5
Cam05g2147 . 73 260 Leucine-rich Repeat extension Gene Families AT3G24480 68.6 8.8e-46 181.8
Cam07g0243 . 46 376 Leucine-rich Repeat extension Gene Families AT3G24480 60.5 4.4e-45 179.5
Cam06g0356 . 34 225 Leucine-rich Repeat extension Gene Families AT3G24480 51.8 3.0e-38 156.8
Cam06g0358 . 34 225 Leucine-rich Repeat extension Gene Families AT3G24480 51.8 3.0e-38 156.8
Cam06g0359 . 34 225 Leucine-rich Repeat extension Gene Families AT3G24480 51.8 3.0e-38 156.8
Cam05g0566 . 15 364 Leucine-rich Repeat extension Gene Families AT3G22800 72.1 9.8e-71 264.6
Cam07g0243 . 46 375 Leucine-rich Repeat extension Gene Families AT3G22800 64.4 1.6e-49 194.1
Cam06g1139 . 73 401 Leucine-rich Repeat extension Gene Families AT3G22800 62.5 8.4e-38 155.2
Cam06g1139 . 47 405 Leucine-rich Repeat extension Gene Families AT5G25550 61.2 8.2e-40 161.8
Cam11g0299 . 58 417 Leucine-rich Repeat extension Gene Families AT5G25550 62.4 1.2e-38 157.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000785 1 2 1 1 0 5 5 5 5 1 2 5 5 4 2 4 4 4 3 4 4 3 2 4 3 3 5 2 2 1 92