Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0384 ATGGATCGAAGGGATCCGATGGCGTTATCGGGGTCGCAATCTTTCTATATGCAGAGGGGAATTAGCAACTCTGGCTCTGGAGCACAGGGTTTGCGTTCCTCTACTAACCCAAATGTGGCATTTCAGACCAACACTGGAGGAAACAATGTTGGATCAGGGTTGCCAATGGACCCTAACCCTGCCATTTCACCTTATGGTGGCAATGTGGGGGCTCAATCTGGTGGAGTAGTTGCCAGTGAGCCTGTGAAACGCAAGCGAGGTCGGCCTCGCAAGTATGGAACTGAAGGGACTGTGTCTTTGGCACTGTCTCCCTCCCCTTCTGCTGTAAATCCAGCCACTGTAGCTTCTTCCCCAAAGCGGGGAAGGGGACGGCCTCCCGGCTCTGGAAAGAAGCAACAAATGGCTTCTCTTTGTGAAACACTTTCTGGGTCAGCTGGCATGGGTTTTACTCCACATGTTATTACCATTGGAATAGGAGAAGATGTTGGTGCCAAGATTATGTCATTTTCACAGCAGGGACCAAGAGTTGTATGCATCTTGTCAGCAAATGGTGCTGTCTCCACTGTTACTCTTCGTCAGCCTTCGACTTCGGGAGGCACAGTCACATATGAGGGGCGTTTCGAGATAATATGTCTGTCGGGCTCTTATGCTCTTGGAGAAGTTGCTGGTTCTAGGAACCGCACTGGTGGTCTGAGTGTCTCCCTTGCTAGCCCTGATGGGCGCGTTATCGGCGGTGGAGTAGGAGGAGCGCTTATCGCAGCAACCCCGGTTCAGGTGATAGTAGGGAGTTTCATGTGGGGCAGTTCGAAGTCAAAGTACAAGAAGAGGGAAGCTGTTGAAGGCGTGATCGACTCGGATCATCAGTCGGTAGATCATGCAGTTGCAATCGCAAACGTGCAGCAGAATCAGAATCTGACTCCAACGTCCTCAGTTAGCATGTGGCCATCCTCGCAGTCTCTGGACATGCGCAATGCTCACATTGACATCGATCTGATGCGCGGTTGA 1005 51.54 MDRRDPMALSGSQSFYMQRGISNSGSGAQGLRSSTNPNVAFQTNTGGNNVGSGLPMDPNPAISPYGGNVGAQSGGVVASEPVKRKRGRPRKYGTEGTVSLALSPSPSAVNPATVASSPKRGRGRPPGSGKKQQMASLCETLSGSAGMGFTPHVITIGIGEDVGAKIMSFSQQGPRVVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIICLSGSYALGEVAGSRNRTGGLSVSLASPDGRVIGGGVGGALIAATPVQVIVGSFMWGSSKSKYKKREAVEGVIDSDHQSVDHAVAIANVQQNQNLTPTSSVSMWPSSQSLDMRNAHIDIDLMRG 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5941454 5944716 + CaPI482276_06g003840.1 Cam06g0384 128684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0384 334 PRINTS AT-hook-like domain signature 83 93 IPR017956 GO:0003677(InterPro)
Cam06g0384 334 PRINTS AT-hook-like domain signature 117 128 IPR017956 GO:0003677(InterPro)
Cam06g0384 334 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 44 317 IPR039605 GO:0003680(InterPro)
Cam06g0384 334 Pfam Plants and Prokaryotes Conserved (PCC) domain 151 264 IPR005175 -
Cam06g0384 334 ProSiteProfiles PPC domain profile profile. 145 286 IPR005175 -
Cam06g0384 334 CDD DUF296 150 264 IPR005175 -
Cam06g0384 334 SMART AT_hook_2 83 95 IPR017956 GO:0003677(InterPro)
Cam06g0384 334 SMART AT_hook_2 119 131 IPR017956 GO:0003677(InterPro)
Cam06g0384 334 Gene3D - 151 283 - -
Cam06g0384 334 MobiDBLite consensus disorder prediction 11 52 - -
Cam06g0384 334 FunFam AT-hook motif nuclear-localized protein 1-like 151 281 - -
Cam06g0384 334 MobiDBLite consensus disorder prediction 98 114 - -
Cam06g0384 334 MobiDBLite consensus disorder prediction 1 135 - -
Cam06g0384 334 SUPERFAMILY AF0104/ALDC/Ptd012-like 149 274 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0384 Cam-Chr6:5941454 Cam08g1372 Cam-Chr8:20042464 4.50E-62 dispersed
Cam01g0279 Cam-Chr1:3120353 Cam06g0384 Cam-Chr6:5941454 4.80E-71 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0384 - - - 0.0