Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0414 ATGCGACTGGGAAAGTACGAGCTTGGAAAGACTCTGGGGCATGGCAATTTTGGGAAGGTCAAATTTGCTATTAATTTCGAAACTCATCAACCCTTTGCTGTCAAAGAAGTTGATAAGACCAAGATTATCCATCTTAATATCACCCATCAGTTTAAAAGGGAAATACAAACTCTCAAACTTCTCAAGCATCCAAATATAGTGAGGCTACATGAGGTTTTGGCTAGTAAAAGCAAAATTTACATGGTTCTCGAGTACGTTAACGGCGAAGAACTATTTGATACAATCGCATCAAAGGGGAAGCTATCAGAAGCTCAAGGCAGAAAAATCTTCCAACAATTACTTGACGGTGTGAGTTACTGCCATAGGAAAGGCGTTTACCATAGAGATCTCAAGTTGGAGAACATACTTGTTGATACCATGGGAAATGTTAAGATAACTGACTTTGGCTTAAGTGCTTTACCTGAGCATTTTAGGGACGATGGTTTGCTTCACACTACCTGTGGAAGCCCAAATTACGTAGCACCAGAAATTCTTGCTAACAGAGGGTATGATGGTGCTGCCTCGGATATTTGGTCTTGTGGTGTTATCCTGTTTGTAATTCTTACAGGATCTCTTCCTTTCGATGATAGAAATCTGTCTGTTCTTTATCATAAGATTTTGAAAGGAGAAATTCAGCTACCAAAGTGGTTGTCACAAGGAGCCCAAAATTTGATAAGAAGGATTCTTGATCCCAACCCTATTTCTAGAATAACTATGGCATCCATCAAAATGGATGATTGGTTTAGAACAGACTATCATCCAGCCTACCTTGATGATGAAGAAGAAGATATATACACTAGTGAAGCTATGGCCTTCCCAATGCATCAAGTGAGTTCAGAGTGTTCCACTACTATAAATGCTTTTCAATTGATTGGAATGTCCTCATGCTTGGACCTTTCAGGTTTCTTTGAGAAAGAGGACATTTCTGAGAGGAAGATTAGATTTGCAACCAATCACTCTACAAAAGAAGATATCCTCAACCGGATGGATGATCTTGTAACCAATATGGGGTTTCTTGTCCAGAAGAAACAAGGAAGGTTGAAAGTAATGAGAGAGGAAAAGGGTGAGAATGGTGTGTCCACCATACTTTCGGTATCGGCAGAGGTTTTTGAGATAAGTCCATCACTATACGTTGTAGAATTAAGAAAGTTGCATGGAGATTCATCTTCATATAGACAGTTGTGTAATATATTATCTAGTGATTTGGGTGTCCCCTCCAACCAAGACTCGGTGATGGCATAG 1281 39.58 MRLGKYELGKTLGHGNFGKVKFAINFETHQPFAVKEVDKTKIIHLNITHQFKREIQTLKLLKHPNIVRLHEVLASKSKIYMVLEYVNGEELFDTIASKGKLSEAQGRKIFQQLLDGVSYCHRKGVYHRDLKLENILVDTMGNVKITDFGLSALPEHFRDDGLLHTTCGSPNYVAPEILANRGYDGAASDIWSCGVILFVILTGSLPFDDRNLSVLYHKILKGEIQLPKWLSQGAQNLIRRILDPNPISRITMASIKMDDWFRTDYHPAYLDDEEEDIYTSEAMAFPMHQVSSECSTTINAFQLIGMSSCLDLSGFFEKEDISERKIRFATNHSTKEDILNRMDDLVTNMGFLVQKKQGRLKVMREEKGENGVSTILSVSAEVFEISPSLYVVELRKLHGDSSSYRQLCNILSSDLGVPSNQDSVMA 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6243259 6252715 + CaPI482276_06g004140.1 Cam06g0414 128714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0414 426 SMART serkin_6 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g0414 426 FunFam Non-specific serine/threonine protein kinase 295 418 - -
Cam06g0414 426 FunFam Non-specific serine/threonine protein kinase 1 85 - -
Cam06g0414 426 ProSiteProfiles NAF domain profile. 293 317 IPR018451 GO:0007165(InterPro)
Cam06g0414 426 FunFam Non-specific serine/threonine protein kinase 1 299 - -
Cam06g0414 426 Pfam Protein kinase domain 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g0414 426 Gene3D Kinase associated domain 1, KA1 293 417 - -
Cam06g0414 426 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524(InterPro)
Cam06g0414 426 ProSiteProfiles Protein kinase domain profile. 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g0414 426 SUPERFAMILY Protein kinase-like (PK-like) 3 296 IPR011009 -
Cam06g0414 426 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 405 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cam06g0414 426 CDD CIPK_C 299 415 - -
Cam06g0414 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam06g0414 426 Gene3D Transferase(Phosphotransferase) domain 1 86 284 - -
Cam06g0414 426 Gene3D Phosphorylase Kinase; domain 1 1 85 - -
Cam06g0414 426 Pfam NAF domain 296 355 IPR004041 GO:0007165(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0414 Cam-Chr6:6243259 Cam06g1365 Cam-Chr6:25096449 9.40E-105 dispersed
Cam06g0414 Cam-Chr6:6243259 Cam06g0415 Cam-Chr6:6259026 4.80E-149 tandem
Cam05g0810 Cam-Chr5:7148602 Cam06g0414 Cam-Chr6:6243259 2.60E-158 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85242 PF00069 Pkinase 4.70E-72 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0414 K07198 - csv:101206030 720.309