Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0415 ATGCGAATGGGAAAATACGAGCTGGGAAGAACAATCGGGCATGGCAGTTTCAGTAAGGTCAAATTTGCTATAAACCTTGAAACTGGCCAACCTTTTGCTATCAAGGTCCTCGACAAGACCAAAATCATCGATCTCAATTTCACGAATCAGGCATTGAAAGGGAAGGTATCAGAAGACGAAGGCAGAAAAATCTTCCAACAGTTAATTGATGGTGTGAGTTACTGCCATAGGGAAGGTGTTTACCATAGGGATCTCAAGCTAGAGAACATACTTGTGGATGCTAGAGGAAATATCAAGATATCTGATTTTGGATTAAGTGCATTACAAGAGCATTTAAGGGATGATGGTCTGCTTCACACTACCTGTGGAAGCCCAAACTACGTGGCACCCGAGATTCTTGCTAATAGAGGCTATGATGGTGCGACGTCAGATATTTGGTCTTGCGGTGTTATCTTGTTTGTAATTCTCACAGGATCACTCCCTTTCGATGACACAAATTTGTGTGTCCTTTACCAAAAGATCTTGAAAGGAGAAACTCAATTACCAATGTGGCTGTCACAAGGGGCCCAAAAGTTAATTAGACGGATTCTTGATCCCAACCCTATTTCTAGGGCAACTATGGAATCCATCAAAATGGACCATTGGTTTAGTAAGGACTATCATCCACCGAACTTTTACGATGAAGATCAAGAGGATATATACGTGGCCATCTCAACGAATCAAGAGAGTTCAGAGTCTCCCACTACTATAAATGCTTTTCAACTGATTGGAATGTCCTTATGCTTGGACCTTTCAGGTTTCTTTGAGGAAGAGGACATTTCGGAAAGGAAGATAAGATTTACCACCAATCACTCTACAAAAGAAGATATCATTAAGCGAATGGAGGATCTTGTAACAGATATGGGGTTTCTTGTCCAAAAGAAGGAAGGAAGGTTGAAAGTAATTAGAGAGGAAAGGGGTGAGAATGGTGTGGGCAGCATATTTTCAATATCAGCTCAGATCGTCGCAACTTACGCTTCCGGCGAAATGGCCAGCGGCTTGCAGATGAGTCCTCAGTTAGAGCAGATCCATGGGGAAATTCGTGACAATTTTCGGGCTCTTTCAAATGGGTTCCAAAGACTGGATAAGATCAAAGATTCCAGTAGACAAAGTAAGCAGTTGGAGGAGCTCACAGGAAAGATGAGGGAATGTAAAAGATTAATAAAAGATTTTGACCGTGAAATCAAGGAGGAAGAGAGTAAAAATCCACCGGAAGTGAATAAGCAGCTCAATGACGAGAAGCAATCAATGATCAAGGAGCTGAATTCATTTGTTGCATTGAGGAAAACGTATATGAATAGTCTTGGTAATAAAAGGGTTGAGCTATTTGATGAGGGAGGTGTAAGTGAACCTACAGCTGATGATAATGTTCGGATGGCCTCATCAATGACAAATCAAGAACTTATAGATGCTGGGAAGAAGACAATGGATGAAACCGATCAGGCTATTGAACGCACGCAAAAGGTGGTTGAACAAACTATTGAAGTGGGAACTCAAACTGCTGTTACATTAAAAGGCCAAACTGAGCAAATGGGCCGTATAGTAAATGAGCTTGACACAATTAATTTTTCAATTAAGAAGGCTTCCCAGCTTGTGAAAGAAATTGGCAGACAGGTTGCTACAGATAAATGCATCATGCTGTTTCTGTTCCTAATTGTCTGTGGAGTAATAGCCATTATTGTAGTTAAGATTGTGAACCCCAACAACAAAAACATCAGGGATATTCCTGGATTGGCACCTCCAGCTCCTGCAAGGAGGCTTTTGTATCTGAGGACACCTGAACATTTCAAGTAA 1833 41.24 MRMGKYELGRTIGHGSFSKVKFAINLETGQPFAIKVLDKTKIIDLNFTNQALKGKVSEDEGRKIFQQLIDGVSYCHREGVYHRDLKLENILVDARGNIKISDFGLSALQEHLRDDGLLHTTCGSPNYVAPEILANRGYDGATSDIWSCGVILFVILTGSLPFDDTNLCVLYQKILKGETQLPMWLSQGAQKLIRRILDPNPISRATMESIKMDHWFSKDYHPPNFYDEDQEDIYVAISTNQESSESPTTINAFQLIGMSLCLDLSGFFEEEDISERKIRFTTNHSTKEDIIKRMEDLVTDMGFLVQKKEGRLKVIREERGENGVGSIFSISAQIVATYASGEMASGLQMSPQLEQIHGEIRDNFRALSNGFQRLDKIKDSSRQSKQLEELTGKMRECKRLIKDFDREIKEEESKNPPEVNKQLNDEKQSMIKELNSFVALRKTYMNSLGNKRVELFDEGGVSEPTADDNVRMASSMTNQELIDAGKKTMDETDQAIERTQKVVEQTIEVGTQTAVTLKGQTEQMGRIVNELDTINFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKNIRDIPGLAPPAPARRLLYLRTPEHFK 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6259026 6277025 + CaPI482276_06g004150.1 Cam06g0415 128715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0415 610 Gene3D Transferase(Phosphotransferase) domain 1 47 250 - -
Cam06g0415 610 Coils Coil 387 414 - -
Cam06g0415 610 FunFam Maternal embryonic leucine zipper kinase 44 244 - -
Cam06g0415 610 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 486 548 IPR000727 -
Cam06g0415 610 SMART tSNARE_6 481 548 IPR000727 -
Cam06g0415 610 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524(InterPro)
Cam06g0415 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 80 92 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam06g0415 610 SUPERFAMILY SNARE fusion complex 476 549 - -
Cam06g0415 610 ProSiteProfiles Protein kinase domain profile. 1 216 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g0415 610 CDD SNARE_SNAP25N_23N_29N_SEC9N 485 547 IPR044766 GO:0005484(InterPro)|GO:0031201(InterPro)
Cam06g0415 610 ProSiteProfiles NAF domain profile. 245 269 IPR018451 GO:0007165(InterPro)
Cam06g0415 610 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 3 43 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cam06g0415 610 CDD CIPK_C 251 334 - -
Cam06g0415 610 SMART serkin_6 6 216 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g0415 610 Pfam Protein kinase domain 53 216 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g0415 610 Gene3D Phosphorylase Kinase; domain 1 4 46 - -
Cam06g0415 610 SUPERFAMILY Protein kinase-like (PK-like) 3 228 IPR011009 -
Cam06g0415 610 Pfam NAF domain 247 307 IPR004041 GO:0007165(InterPro)
Cam06g0415 610 FunFam novel plant SNARE 11 477 556 - -
Cam06g0415 610 Gene3D Kinase associated domain 1, KA1 251 344 - -
Cam06g0415 610 Gene3D - 477 556 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0810 Cam-Chr5:7148602 Cam06g0415 Cam-Chr6:6259026 1.90E-116 dispersed
Cam06g0415 Cam-Chr6:6259026 Cam10g0208 Cam-Chr10:3783935 1.30E-86 dispersed
Cam06g0411 Cam-Chr6:6213548 Cam06g0415 Cam-Chr6:6259026 9.20E-19 proximal
Cam06g0414 Cam-Chr6:6243259 Cam06g0415 Cam-Chr6:6259026 4.80E-149 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85243 PF00069 Pkinase 1.50E-42 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0415 K07198 - csv:116404531 505.368