Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0417 ATGGCTTCCTTCTCCTTCTCCTCGCTCCTTCCTTCTTCAGTTTCTTTCGATCATGGCTCCCCTTCCTTTTTTCCCATCTTTGTTTCATCTTCTTCACACTCCAATTCTCGCATTGTTCGCTGTGCATTTGCAGCCCCCACTAGAAAATTCCCTCCTCCTCCTCCTCCTTCTACTTCTTCTTCATTACCTGCTAAGAAGAAGCACTGGAAGCAAGGGGAATTTCCAGGAATTACAGAGACATCCGCCCCCAGGAAGACCCCTCTCAAGAATGTCAAAAAGAAATTAGACCGCAAGAACAATGCCAAGGCTTGGGCCAACACCGTCACTGAAGCCTTGTCCGACCATATCACGAATAAACGGTGGCTTCAAGCTCTTGAGGTGTTTGAAATGCTCCGCGAACAGCCGTTTTATGAACCAAAAGAAGGAACTTACATGAAGCTGCTTGTTCTACTTGGGAGATCTGGCCAACCACATCGTGCCCGTCTGCTTTTCGACACAATGGTTGAAGAAAGATGTGAACCTACCTCTGAACTTTACACTGCTTTGCTTGCTGCGTATTGTCGGAACAATCTCATTGATGATGCATTCTCCACTCTTAATCTCATGAAGACCCTCCCTGGCTGCCAACCTGATGTGTACACTTATAGTACCTTAATCAAGGCTTGTGTCGATGCTTCTCGCTTTGATATGGTCGAATCATTGTATGAGGAAATGGCCGAACGACTGATAACTCCAAATACAGTGACTCAGAACATAGTCTTAAGTGGATACGGCAAGATAGGGAAGTATGACCAAATGGAGAAAGTTCTTTTAGGAATGCTTGAGAGCACAACTTGTAGACCGGATGTGTGGACAATGAATATAATTCTTAGCGTGTTTGGTAATAAGGGACAGATTGAAATGATGGAAAAATGGTATGAGAAGTTTCGTAACTTTGGTATCGAGCCAGAAACACGTACATTTAATATTTTGATTGGTGCTTATGGGAAGAAAAGGATGTATGATAAAATGTCTTCTGTGATGGAGTATATGCGCAAACTGCAGTTTCCTTGGACGACATCAACGTACAACAATGTGATTGAAGCTTTCGCTGATGTGGGAGATGCAAAGAACATGGAGTACACGTTTGAGCAGATGCGTGCTGAGGGCATGAGAGCAGATACCAAGACATTCTGTTGCCTTATAAACGGATATGCAAATGCAGGTCTCTTCCATAAGGTAATTAGCTCAGTTAAGTTGGCAGGAAAATTCGAGATTCCAGAAAATACCTCATTTTATAATGCAGTTATATCTGCATGTGCTAAGGCTGAGGATCTGATGGAAATGGATAGAGTATTTAAGCGAATGAAAGATAAACATTGTCGGCCAGATAGCAAAACATATTCTATTATGATGGAAGCATATGGAAAGGAAGGCATGAATGATAGAGTTCATTACTTGGAGCTGGAAAAGAAACAGAGCTTTTGTGACAATGAAGCTGATCAGTATTTAGTGTCTCCCAATTCTAGTTATATTAGTCTTAGGCGAACTTGCTTTTTGTTCTGGACAAATTGGCGTGCAGTGAGAAAACGTACGAGACTCTCAAGTCCGCACACGGTGGCCACCTGTCCTTGTACACCCATGCGAGCTATGTTAAAGGTATTTGCTTACAAGGGCACAGTATTCTAG 1668 42.81 MASFSFSSLLPSSVSFDHGSPSFFPIFVSSSSHSNSRIVRCAFAAPTRKFPPPPPPSTSSSLPAKKKHWKQGEFPGITETSAPRKTPLKNVKKKLDRKNNAKAWANTVTEALSDHITNKRWLQALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPHRARLLFDTMVEERCEPTSELYTALLAAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYSTLIKACVDASRFDMVESLYEEMAERLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMEKWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKFEIPENTSFYNAVISACAKAEDLMEMDRVFKRMKDKHCRPDSKTYSIMMEAYGKEGMNDRVHYLELEKKQSFCDNEADQYLVSPNSSYISLRRTCFLFWTNWRAVRKRTRLSSPHTVATCPCTPMRAMLKVFAYKGTVF 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6292943 6295204 + CaPI482276_06g004170.1 Cam06g0417 128717

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0417 555 Pfam PPR repeat family 281 329 IPR002885 -
Cam06g0417 555 Pfam PPR repeat family 353 400 IPR002885 -
Cam06g0417 555 Pfam PPR repeat family 422 469 IPR002885 -
Cam06g0417 555 Pfam PPR repeat family 175 223 IPR002885 -
Cam06g0417 555 MobiDBLite consensus disorder prediction 46 86 - -
Cam06g0417 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 140 174 IPR002885 -
Cam06g0417 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Cam06g0417 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Cam06g0417 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 281 IPR002885 -
Cam06g0417 555 Gene3D Tetratricopeptide repeat domain 206 273 IPR011990 GO:0005515(InterPro)
Cam06g0417 555 Gene3D Tetratricopeptide repeat domain 274 348 IPR011990 GO:0005515(InterPro)
Cam06g0417 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Cam06g0417 555 Gene3D Tetratricopeptide repeat domain 415 487 IPR011990 GO:0005515(InterPro)
Cam06g0417 555 Gene3D Tetratricopeptide repeat domain 81 205 IPR011990 GO:0005515(InterPro)
Cam06g0417 555 Gene3D Tetratricopeptide repeat domain 349 414 IPR011990 GO:0005515(InterPro)
Cam06g0417 555 NCBIfam pentatricopeptide repeat 285 316 IPR002885 -
Cam06g0417 555 NCBIfam pentatricopeptide repeat 143 175 IPR002885 -
Cam06g0417 555 NCBIfam pentatricopeptide repeat 178 212 IPR002885 -
Cam06g0417 555 NCBIfam pentatricopeptide repeat 248 282 IPR002885 -
Cam06g0417 555 NCBIfam pentatricopeptide repeat 426 458 IPR002885 -
Cam06g0417 555 NCBIfam pentatricopeptide repeat 213 246 IPR002885 -
Cam06g0417 555 NCBIfam pentatricopeptide repeat 320 348 IPR002885 -
Cam06g0417 555 NCBIfam pentatricopeptide repeat 355 387 IPR002885 -
Cam06g0417 555 Pfam PPR repeat 143 172 IPR002885 -
Cam06g0417 555 Pfam PPR repeat 251 275 IPR002885 -
Cam06g0417 555 PANTHER EXPRESSED PROTEIN 63 482 IPR044179 GO:0003729(InterPro)
Cam06g0417 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
Cam06g0417 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0417 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0417 Cam-Chr6:6292943 Cam09g0883 Cam-Chr9:9091908 6.20E-48 dispersed
Cam06g0417 Cam-Chr6:6292943 Cam06g1671 Cam-Chr6:28087136 3.70E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g249 . Blo12g00376 Bda03g00833 . Bpe04g00789 . Bma04g00732 . . . . . . . . . . . . . . . . . Cla06g00396 Cam06g0417 Cec06g0425 Cco06g0425 Clacu06g0404 Cmu06g0404 Cre06g1183 Cone14ag0683 Cone15ag0695 . . . . . . . . . . . . . . Sed09g0597 . . . . . . Cpe12g00347 . Bhi12g01993 Tan06g2812 Cmetu11g0485 Lac11g1038 Hepe03g0014 . Lcy12g0899 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008423 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 0 2 2 1 35