Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0419 ATGCATGTAGCAACAATGGCACTCCAAGAGTTACCGGTTGATGTTCCACATTTTGACCTTGAGGAAGATCCATCTTTCTGGAAGGATCACAACGTGCAGGTAATGATACGTATTCGACCCTTGAGTACTACGGAGAGAGACTCTCAAGGTTATGGTCGATGCTTGCGACAGGAAACCGCAAAGACTCTTGTGTGGCTTGGTCACCCAGAAACCAGATTCACCTTTGATCATATAGCTTGCGAAACAATATCACAGGAAAACCTTTTCAAAGTTGCTGGACAGCCAATGGTGGAGAATTGTTTGTCTGGTTATAATAGCTGTATGTTTGCTTACGGCCAGACTGGTAGTGGCAAAACATATACCATGATGGGTGGGATATACGAGGTGGAGGGCAAACTCAACGAAGATTGTGGACTAACTTTACGCATTTTTGAGCATTTGTTTACAAGAATTGGAATGGGTGCTGCAAACAGAAAGATGGCTGCTACATATATGAACAGTGAGAGTAGCCGCTCCCACAGTGTTTTTACTTGTATAATTGAAAGTCACTGGGAGAAAGATTCTAGAACTCACTTTAGATTTGCGAGCTCAGCCAATGAAACACTAAGCACTCTCAAATTTGCGCAGCGTGCCAAACAGATTCAGAATAATGCAAAAGTTAACGAGTGTGCTTCAGGTGATGAAACTGCACTCCAAAGGCAAATCCTACACTTGAAGGGTCAGTTGTCCTTTCTACTGAAGCACAGTAATTTTCCAAGGTCTATACTAAATAGCGTTCCAAGACTTGAAGAGTCTGGAGTAAGTGCTCTGTTTGAAGGCTATGATGCATTAGGGGGTAGAATGCAAACTGAAAATCGTAAGATGAAACTCATGGAAGCTTCCTTAATTGGTGCATTAAGGAGGGAAGAAGTGGCCAATGCTACAATAAAAAAGCTTGAGTTCGAGATTGAACACATGAAGTGCTTGGCTTTCCAACAAGAGGAGGATGGTCAACGTACTAAAATGTTGTTAAAATTTCGTGAGGAGAAGATCAGACAACTTGAATTGTTTTTAGGTGGGATGCTGTCCGCTGACCAATATCTTTTAGAGGAAAACAAGGCCTTAGCGGTGGAGATTAAGATGCTTCAAGCAAAGATTAACCGAAATCCAGAATTGACAAGAGTCTCTTTTGAGAATTCTAAACTCACCGAGCAACTTCAAGTGTATCAAAATTTTTATGAGCTAGGAGAGCGTGAAGTGTTGCTAACTGAAGTTTCAGAATTACGCAATGAGCTTCTGATGGCTCTGGGAAAAAACTCAACCATATCTGAACAAGATAAATATCAGGATGAAACAATGTCCATCAAGAGTTATACCCAAGATGACACGCTATCTTATATTACAGGAAGTGATGAGAACTTCGAAAATACAATAGGTCAAGGTTCAGATAATGAACTCGGAGCAAAGCCCATTTGTTCTCAGAAAGATCTGATCGATGCAAAAATGTTGGCTCAATCAATGGATTCAGATAACACTATGCAAGCTGAGAATCATGGATGCAAGCAGTTCAAACACTGCATGGTGGAAAACTTCTTACATAAATCCAATGTTACAAAATGTCAAAATGAAGGAAATGTGATGAACCAACATGAAGATGTTGACAACAAAACTTTGCAAGTCAAGTTGGAAAACTTGACTAGGGAACTTGAGGAAGTCAGATTATCTAATATTCAGTATCAAGAAAATCAGAACCAACAGAACCAAAGTGAAGATGTGCGTCAACAGGTTGAGATGGAGACAGCCAATACAATTCTTCAATTACAGGAAGAGGTTGAAACTCTTCAGTTAGAACTTAATGATAGGTTACATGGCTTAGCCCAGGAAAATACACGACTGAAAGATTTGTTGTCTGCAAAAAATGAGGAGATGAGGATGCTATGTATTGACTGGGAAACAGCAATGGTAGAACTAACAAATTTCCTTCTCGATGGTTCTAAATCTATCAGAGATGCACATGGGCAGATAGAAAGTATCGCTAATTTGTTTCCTAAAGTAAATGTTGGAATTAGTGAACAAGTGCAGCAGGCGATCAAAGTTTGTATCGAAAAAGAAGAAACAATTCTGTTATTGCATAAAAGTTTGGAAGATGCACAACTCATGGTGAAAGAAATGGAGCTGAAGTTAGATTCTCTGAAGGAAGCAACACTCGCCCTAAATGAATCACAACAAATGGATGATAATATTAGTGCTGCAGGTGCTAAACCATTGAGCACTCAGATGACTGACGAGAATATTATGGTAGAGTTTCTAGGCAAAAGACTTGGAGTTAAGAATGATCAGTTAAGTGAGGCAGAGAAATCTGCTGATGCTGCAGTCATTGCAGTAGAATGGTCATCCCAACCTCAGGAGCTGGCCTGCTGTTATAACATTGAGAGAGAGATGCCCATCTCAAAGTTGGATGTTTCATCTCAAAGAAGCAGTCACATCTTTGATGATGTAATGGCCAATGTGAATGAATTACTGCTGGAAGAATCAGATACTGAAAGCAATATGATATGGTTAGGTTTAGCGGAGTTAAAGAATATAACCAGTGGACATTATGCAGACATGGAAATGCATATTTCAGCTCTCCATATCTACATTCAAAACCTGTATTCTGAATATCAAGATTTAGTCCAGGACATGGTTAGCGAAATTCATGAATTGAGGTTAAAAGCCAAGACATCAAATGAAAATTGTAAAAGTCTCCAATTCTTCAAAGATAAAGATCAACCAGCACACAAATATTGGAATGTTGAAAACCAAAATAGTATTTTGGATCAAATAAAGGCTAAAATATATGAAGCAAAAAACAGACTAAATATTCTTGAAGATTCTATTGATAGAAATATAGTTGGTTGTGGAGAACAGTATTTAGATCAATATCCAGTGAAAGAAGATGGCTGGAGTTCTGATTGTTCTACTTCAAGCTCTGACATTTCAACTGAGAGTGTTACTTCAAGAGGGAAACTTTTGGACTATATGAATGGTGACAAAGGAACCACAACTTGTCTGAGAAAGGAGTTGTATATGACGTATAATGTGATCCATAAACTATGTCTGCAAATAGATGCGCTTCATGATACAGGAGGTGATTCTTTGGCAGAAGAAATGGACCAGGGAAAAACACCCTTCAAACTGAGGATGGAAAAAGCTGAAGCTGGTTGCAATAACACCAGCCAGGTAACTTCTGTTGAGGAGACTAAAGAGGATGGGGGATTCTTGAACAGATTAGAAGAAGCTCAAGAAGCAATAAGAGAAGCTGATATTATGTTAAATGCATTGTTGAGAGCCAATGAAAATGCAAAGCAACAAACCGGTATATTTAAGCAAGCTGGTGAGCAGTTACAGATAGAAAGAGAAAAATTGATTGACGAAGTTGGACAGCTCAAGTCTTCAATGCATCTGAAGGATGCTGAGAATAAATTACTTCATGAACAAGTTTGTTTTAATTTGGAAGAGGTAGCTAGCTCAGTGTCTTCTCTTGAAGGTTGTATTTCACAAACACAGAGGGATGTGGATGAGAAGTTTGGCATAATATCTTGTGATATCATATCCTTTAGAGACGAGATGCTCAAATCTGTTGGTAACTGGAAATCCCTATTGGAAGATGTTTTCTTGGAAGTAATGGGAAGAGAATTTATGTCATTTGTTGTCCATCAGTGTGTGAATGAAATTTGTTGGCAATTTGCACAGTTTAAGGCAGAACCTAACTTTTTACCACTTAAATGGCAAAGGTGTTTGGAATCAACCAATATTTCAGGATCTACATGCCTTACTGATAAGGAGGATATTATGTTAATCAGTAAGATTGACAGAGGAAGAACTGAGCTAATCACAGGCTTGGAAGAGGCAGATGGAGGTTTTTCCTATGATGACATGTTGTATGAGAATTTGGCACTTAAGAAGGAATTGAAGAGGAAGGAGGTATTATTGGAAGGTTTGCTTTTCGATTTTAGGTTGCTGCAGGAATCAACCTCAAAAACAAAGGATATGAAAAATGAGACAGATTATTCTCTGAGTCAGCTGCAGCATGAATTGGAGATTAAGGCAAATCAGCTTGACAGTGTGCTAGTTCAGCAAAGAAAACTTGAGGGGCTTCTGACTGATACTGAAAAGGCTTTGTTCTCATCTAATTCCAAGCTTGATAAGGCAAAAGAAACAATGACTTCAATTTCAGAACATAATGCACAGTTGAAGAAGCAGGTAGAAGATCTTTATCTCAAGAAATCTGAGGCTGGAAAACAATTGGCAGAACAGCAGGATGTAATTAATAAACTAGAAAATGAAATAATCCATCTTACTTCACTGGAAAAGAAATCAGTTCTATCAGTTGAAGACATTGAGAATGAATTGAGCAGAGTCATCAGTGAGAGAGACCAACTCCATGAACAAGTCTGCTTTCTGACTGACAAGCTTGGCATAGCCTATGCATTGGCTGATGAAAAGGAAGCTGTGGCCACTGAAGCTCGTCAGGAATCAGAGGCCAGTAAATTGTACGCAGAACAAAAGGAAGAGGAGGTGAAGATCTTGGAACACTCTGTTGAGGAGCTTGAGAGTACCATAAATATGTTGGAGACAAAGGTGCATGAGATGGATGAGGAGGTTGAGAAAAACCGCACATTAAGAGAATCATTAGAACTGGAGAAACAAATCTTCAGACAGAGACTATTAGCTGTACAAAGTCTCTCTGAAGATGTGGATTGTGGAGATGAAATTGTTGAGCATGCTCAAGAGCAACCCAGGCAAGCGGGAATTATAGTTCTAGAACTGCTGGAGACACAGAGTAGAATAAAACTTCTTGAAGAGGAAAGGGTAGAACAAGACAAAGAGGTCAAACGACTCAAAGAATACATCTCCGAGCTTGTATTACATGCCGATGCCCAGGCAATGAAGTACCAACAAAAATACACAAATCTGGAAGTAATGGTCCGCGATGCAAGCAAAGATCATTCAAATCCAATGACTGCACCAACGTTAGATAAAGTCGAAAAGAATTCTGCGAGACCGAGGGGTTCAAGCTCACCATTCAGATGCATTTCAAACTTGGTGCATCAGATGAACTTGGAGAAAGAGCATGAGCTGTCTACAGCAAGGCTTCGTATAGAGGAGCTTGAGGGACTGGCAACTAGTCGGCAAAAAGAGATATGTATACTGAATGCTAGGCTGGCAGCAGCAGAAAGTATGACGCACGATGTTATTCGAGATTTACTTGGTGTTAAACTGGACTTGACTAAATATGCTAACTTTATAGAACAATACCAAGTTCAGCAAATGGTTATGGAGGCTCATCTACAGTCTCAACAATTCCGGGAAAAGGAACAAGAGGTTCACGACTTGAGGACACAAATTAATGATTTACAGGAGGAACGAGAATGTTACAAATCTGTACTAAGCAAGAAGGAAGCTGAAGCACTCGCGACACAAATAGCTTGCGAGAAACTACGAGAGCGGGATCACTTGCTTTCTGTACAAAATGGGATACTGAAGATGGAAAACAAAAATCTAAAGAGGAAGATCGTTGAGCTGGATGGAAAGGCAAACACACTTCATCAAACACGAATCAGCCAACAGGAAAATCGTCATACATTTCTAACCAAGAATGATGAGTTAAGTAAGAGGTTGGCTAACTCAAAAATGCTTCTCTCCCGCGTGAATGATGAAATCGCTCGTTACCGTATTCCTAGTGGTAGTTCTTCACATCACCGAAGTGGAGGCTCTGGAAACGAGATATCTCACGAACCACTAGAACGAGGGACTGAGGGCTTGGTTTGGTTGATGCATATAGTCAGTATCAAGGATGGTACCACGTTTGTAAATGGTAGTTCGAAGTTCCACGTCCTGTTTGTAAGTTTGTCCCTAATGTTCTTCTACAGCTGCGAGGTCAGGCCAACTGAGCTTCAAATCTCAACTGAAATAGCGAAACCTACTGCTGCAGATTTCAAGAAGCTGATGATGATGATAACGAAGAGAATTAAAGAAGAGAAACTAAAGTAA 6015 39.63 MHVATMALQELPVDVPHFDLEEDPSFWKDHNVQVMIRIRPLSTTERDSQGYGRCLRQETAKTLVWLGHPETRFTFDHIACETISQENLFKVAGQPMVENCLSGYNSCMFAYGQTGSGKTYTMMGGIYEVEGKLNEDCGLTLRIFEHLFTRIGMGAANRKMAATYMNSESSRSHSVFTCIIESHWEKDSRTHFRFASSANETLSTLKFAQRAKQIQNNAKVNECASGDETALQRQILHLKGQLSFLLKHSNFPRSILNSVPRLEESGVSALFEGYDALGGRMQTENRKMKLMEASLIGALRREEVANATIKKLEFEIEHMKCLAFQQEEDGQRTKMLLKFREEKIRQLELFLGGMLSADQYLLEENKALAVEIKMLQAKINRNPELTRVSFENSKLTEQLQVYQNFYELGEREVLLTEVSELRNELLMALGKNSTISEQDKYQDETMSIKSYTQDDTLSYITGSDENFENTIGQGSDNELGAKPICSQKDLIDAKMLAQSMDSDNTMQAENHGCKQFKHCMVENFLHKSNVTKCQNEGNVMNQHEDVDNKTLQVKLENLTRELEEVRLSNIQYQENQNQQNQSEDVRQQVEMETANTILQLQEEVETLQLELNDRLHGLAQENTRLKDLLSAKNEEMRMLCIDWETAMVELTNFLLDGSKSIRDAHGQIESIANLFPKVNVGISEQVQQAIKVCIEKEETILLLHKSLEDAQLMVKEMELKLDSLKEATLALNESQQMDDNISAAGAKPLSTQMTDENIMVEFLGKRLGVKNDQLSEAEKSADAAVIAVEWSSQPQELACCYNIEREMPISKLDVSSQRSSHIFDDVMANVNELLLEESDTESNMIWLGLAELKNITSGHYADMEMHISALHIYIQNLYSEYQDLVQDMVSEIHELRLKAKTSNENCKSLQFFKDKDQPAHKYWNVENQNSILDQIKAKIYEAKNRLNILEDSIDRNIVGCGEQYLDQYPVKEDGWSSDCSTSSSDISTESVTSRGKLLDYMNGDKGTTTCLRKELYMTYNVIHKLCLQIDALHDTGGDSLAEEMDQGKTPFKLRMEKAEAGCNNTSQVTSVEETKEDGGFLNRLEEAQEAIREADIMLNALLRANENAKQQTGIFKQAGEQLQIEREKLIDEVGQLKSSMHLKDAENKLLHEQVCFNLEEVASSVSSLEGCISQTQRDVDEKFGIISCDIISFRDEMLKSVGNWKSLLEDVFLEVMGREFMSFVVHQCVNEICWQFAQFKAEPNFLPLKWQRCLESTNISGSTCLTDKEDIMLISKIDRGRTELITGLEEADGGFSYDDMLYENLALKKELKRKEVLLEGLLFDFRLLQESTSKTKDMKNETDYSLSQLQHELEIKANQLDSVLVQQRKLEGLLTDTEKALFSSNSKLDKAKETMTSISEHNAQLKKQVEDLYLKKSEAGKQLAEQQDVINKLENEIIHLTSLEKKSVLSVEDIENELSRVISERDQLHEQVCFLTDKLGIAYALADEKEAVATEARQESEASKLYAEQKEEEVKILEHSVEELESTINMLETKVHEMDEEVEKNRTLRESLELEKQIFRQRLLAVQSLSEDVDCGDEIVEHAQEQPRQAGIIVLELLETQSRIKLLEEERVEQDKEVKRLKEYISELVLHADAQAMKYQQKYTNLEVMVRDASKDHSNPMTAPTLDKVEKNSARPRGSSSPFRCISNLVHQMNLEKEHELSTARLRIEELEGLATSRQKEICILNARLAAAESMTHDVIRDLLGVKLDLTKYANFIEQYQVQQMVMEAHLQSQQFREKEQEVHDLRTQINDLQEERECYKSVLSKKEAEALATQIACEKLRERDHLLSVQNGILKMENKNLKRKIVELDGKANTLHQTRISQQENRHTFLTKNDELSKRLANSKMLLSRVNDEIARYRIPSGSSSHHRSGGSGNEISHEPLERGTEGLVWLMHIVSIKDGTTFVNGSSKFHVLFVSLSLMFFYSCEVRPTELQISTEIAKPTAADFKKLMMMITKRIKEEKLK 2004
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6307772 6324917 - CaPI482276_06g004190.1 Cam06g0419 128719

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0419 2004 SMART kinesin_4 29 222 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam06g0419 2004 Coils Coil 1507 1555 - -
Cam06g0419 2004 MobiDBLite consensus disorder prediction 1901 1920 - -
Cam06g0419 2004 Coils Coil 1084 1111 - -
Cam06g0419 2004 Gene3D Kinesin motor domain 24 152 IPR036961 -
Cam06g0419 2004 MobiDBLite consensus disorder prediction 1655 1680 - -
Cam06g0419 2004 Coils Coil 1694 1714 - -
Cam06g0419 2004 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 227 IPR027417 -
Cam06g0419 2004 Coils Coil 1597 1624 - -
Cam06g0419 2004 Coils Coil 1451 1471 - -
Cam06g0419 2004 ProSiteProfiles Kinesin motor domain profile. 31 151 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam06g0419 2004 Coils Coil 1388 1443 - -
Cam06g0419 2004 PANTHER KINESIN-LIKE PROTEIN KIN-12D 476 1909 IPR044986 GO:0000910(PANTHER)
Cam06g0419 2004 Coils Coil 1874 1894 - -
Cam06g0419 2004 Coils Coil 707 734 - -
Cam06g0419 2004 Gene3D Kinesin motor domain 153 194 IPR036961 -
Cam06g0419 2004 Coils Coil 615 635 - -
Cam06g0419 2004 Coils Coil 1776 1824 - -
Cam06g0419 2004 Coils Coil 541 610 - -
Cam06g0419 2004 Gene3D Kinesin motor domain 195 250 IPR036961 -
Cam06g0419 2004 Pfam Kinesin motor domain 37 151 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam06g0419 2004 Coils Coil 932 952 - -
Cam06g0419 2004 Coils Coil 1839 1859 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0419 K10400 - - csv:101204935 2896.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0419 Cam-Chr6:6307772 Cam09g1818 Cam-Chr9:32623720 3.20E-187 dispersed
Cam06g0419 Cam-Chr6:6307772 Cam03g0184 Cam-Chr3:2793275 4.20E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g244 Blo01g00025 . . . . . . Bma05g00987 . . . . Car06g01297 . . Cpe08g00117 . . . . . . . . Cla06g00398 Cam06g0419 Cec06g0427 Cco06g0427 Clacu06g0406 Cmu06g0406 Cre06g1185 . Cone15ag0698 . . . . . . . Blo07g00066 Bda11g00439 . Bpe05g00795 Bpe13g00757 . Bma06g01400 . . . . . . . Cpe12g00346 . Bhi12g01988 . . . . . Lcy12g0897 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012899 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 28