Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0425 ATGGTAGCTGAAGCTGAGATCAAATGCCCCAAAACCGTTCCTCTCGTGAAAATCAACTATCATCTTTGCGTAACCGATGATCGCGATCTTGAGATCCATTTGCCGCACCCTTCTTCCTCACCTGTTTTTCCCGAGGCAGTTAGTTGTTCAGATATTGTTGAAGACGTGCATATAAAATCAACTGCCATAGATTTTGTTCCAAACATTCGATCTGGTAGCTATGCAGACATTGGAGCTCGAGATTCTATGGATGATGAACATGTCTGCATTGATGACCTGTCTGCCCACCTCAGATCTGTGTTCAAATGTTCTATGCCTAATGGTTTCTATGCTGTTTTTGATGGTCATGGAGGGCCTCATGCAGCTGCTTTTGTCAAGAGGAATGCCATGAGATTATTCTTTGAAGATGCCGATTGGTTAAAAATGCAGGACATTGATTCTATTTCTTTGAAAGATTTGGAGAACTCTCATCGCAAAGCATTTCAATTGGCAGATCTTGCCTTGGCTGATGAGCAAAGTGTTAGCAGCTCGTGCGGGACAACTGCGTTGACTGCGTTGGTCCTTGGGAGGCATTTGCTTGTTGCAAATGCCGGTGATTGCCGAGCAGTCCTATGTAGGAAAGGTGTAGCAGTCCCAATGTCTGAAGATCACAGGCCTTCTAATTTACTTGAGCTCAAGCGAGTGGAAGGGATGGGTGGGTTCGTAGATGATGGATATGTTAATGGCTATATTTCAGTAACCAGGACCTTGGGGGATTGGGATCTGAAATTGCTAAATGGCTCCTCATCACCTCTCATTGCTGAGCCACAAGTGGAGCATGTTATTTTAACAGGCGATGATGAGTTCTTGATTCTCGGCTGTGATGGGATTTGGGACGTAATGTCGAGCCAATATGCTGTCAGTCTCGTTCGACGTGGGTTGAGGAAGCACAATGACCCTCATCAAAGTTCCCGAGAATTAGTCCAGGAAGCTTTGCGCCTCAACACATCAGATAATCTTACTGCAATTGTAATCTGCTTTTCTTCTCCGAATTGTGTTCCCCAGCAGCGAATATGCAAGTCGTGTAATCTGACCGAAGAGGCTACAAATAGATTGAGAAGCTTGTTAGAAGGTAACTGA 1119 44.77 MVAEAEIKCPKTVPLVKINYHLCVTDDRDLEIHLPHPSSSPVFPEAVSCSDIVEDVHIKSTAIDFVPNIRSGSYADIGARDSMDDEHVCIDDLSAHLRSVFKCSMPNGFYAVFDGHGGPHAAAFVKRNAMRLFFEDADWLKMQDIDSISLKDLENSHRKAFQLADLALADEQSVSSSCGTTALTALVLGRHLLVANAGDCRAVLCRKGVAVPMSEDHRPSNLLELKRVEGMGGFVDDGYVNGYISVTRTLGDWDLKLLNGSSSPLIAEPQVEHVILTGDDEFLILGCDGIWDVMSSQYAVSLVRRGLRKHNDPHQSSRELVQEALRLNTSDNLTAIVICFSSPNCVPQQRICKSCNLTEEATNRLRSLLEGN 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6378151 6382992 + CaPI482276_06g004250.1 Cam06g0425 128725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0425 372 PANTHER PROTEIN PHOSPHATASE 2C 60 340 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Cam06g0425 372 Pfam Protein phosphatase 2C 78 332 IPR001932 -
Cam06g0425 372 CDD PP2Cc 69 340 IPR001932 -
Cam06g0425 372 SMART PP2C_4 60 338 IPR001932 -
Cam06g0425 372 FunFam Probable protein phosphatase 2C 22 53 343 - -
Cam06g0425 372 ProSiteProfiles PPM-type phosphatase domain profile. 70 340 IPR001932 -
Cam06g0425 372 Gene3D - 53 344 IPR036457 -
Cam06g0425 372 SUPERFAMILY PP2C-like 59 342 IPR036457 -
Cam06g0425 372 ProSitePatterns PPM-type phosphatase domain signature. 109 117 IPR000222 GO:0043169(InterPro)
Cam06g0425 372 SMART PP2C_SIG_2 85 340 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0425 Cam-Chr6:6378151 Cam11g1902 Cam-Chr11:31539920 6.30E-81 dispersed
Cam06g0425 Cam-Chr6:6378151 Cam09g0478 Cam-Chr9:4938292 4.80E-105 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52100 PF00481 PP2C 1.70E-64 CL0238 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0425 K14803 - csv:101207477 694.115