Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0439 ATGAATCCCATCTTCAATGCTCGCACAAAACATATTGAGATTGACATGCACTTTACTCACTGTCCTCAAGAGGACTGCACAAATTTGGGTATTCGATTTCTCACTTCCGCAAAGCTGGAGAGGCACAGAGGAGACCGCTATGGCCCCGACCAAGATTCCCACCCTTATCGTCACTCTGCAGCTCCTTCTCGCTTCTCGGACTCCCCCGTGAACCATCACGACACTCGTCGGAGCCCCAGTAACTTCCGCGGCGGCGTTGCTGGAGCTAACCGTCGCCCTTTCGACAGCCCGCCTCGTTACTCTACTCCCGCTGCTGCTGGTTTTCGCCCCATGGGAACTGGTGGGGGGTTCCGTCCAATTCCTGGTCCTGGGGGTGGTGGTTTTGGGTCCAGTTTCCAGCCGCCACCTGTTGCAGGACAGAAACGAGGTTACCCTTTTGCCGGCCGTGGAAGTTCTCCAGATCACTCCGATGGAAGCAATTTTGCCAAGCTATTTGTTGGATCCGTTCCAAGGACAGCCACAGAAGAAATTATTCGCCCGTTGTTTGAAGAACATGGAAATGTGATTGAAGTAGCTTTGATAAAGGATAAGAGAACAGGCCAGCAACAAGGATGTTGTTTTGTAAAATATACTACCTCAGAAGAAGCTGATAGAGCAATTAGGAACTTGCACAATCAACATACCCTTCCTGGGGGAGCGGGCCCAATTCAAGTTAGATATGCTGATGGAGAGCGAGAGCGCCTTGGTGCAGTTGAGTACAAATTGTTTGTTGGTTCACTAAATAAACAAGCTTCAGAAAAAGAAGTCAAGGAAATTTTTTCTCCCTATGGAGTAGTTGAAGATGTTTACCTTATGCGGGATGAAATGAAACAGAGTCGTGGGTGTGGATTTGTGAAGTATTCACATAGGGATATGGCACTGGCGGCTATAAATGCTCTCAATGGAATCTTTACAATGAGAGGCTGTGATCAACCGTTAAGTGTCCGCTTTGCTGACCCAAAGAAGCCTAGATCTGGAGATTCAAGGGGCACTCCTGCATTTGGAGGTCCAGGTTTTGGTTCTCGCTTTCAAGCACCTGGGCCAAGACCAATGCCTAATTTTGGTGAATTTATGGGTGATCAAATTCCAATTGATGTACGAGGTTTCAGGCCACCTGTAGATGCTGGTATTCATCCCTTTGGGGGTCAGTTACCTCCTAGGTCGAGTGAAATGGGACCACCTTTGAATTTGGGTGGTCCTGCTAGTGGGTTTAGAGGTCCCAATCAAGGGTTAGTCAATCCAGCATCCTCAGCTTCTCAACAGTCTGCAAGCCAACATCCACAGCATGGCTTGCAAGCGTCGCCAGTGCTAAAGGCAGTTCAGTCACCGAAACAATTGCCACCTTCCAGTCAATTGCACCCTCATGCTCCTTCCTATTCTCAGACACATACATCTGCAGTACTAGCACAGCAGCATAATCAACCACAAAACTTCAATTCTTCTGGTCAATTGCCCTTTAGTCAACCTGCACCTTCCCATGAGTCTTCTGGCTTGGGTGCACAGTTGCCGCTATCTCAGGCTATGGTCCAGCAGGGTGCCTCATCTGCTGCAGTGACACATACTCCTTTGAGCATGAACTTACAATCCCATGCTGCTGCTCCTAATCAACAGCAGCTTCCTACTCCAATTCAGCCACGTCAGAATTCACCTTCCCAGTTAGCACACATGCTGTCACAACAAAAACAAACTCTACAGGCTACTTTTCAGACATCCCAGCAGGCATTCTCTCAGCTACAGCAGCTGATACAACCATCAAATCAAGGTTCAACATTGCAGCCGAGTTCCCAGACTATTAAGCAGCAGTCTCACTGGGCAGGGGCTGTGCCACATACAACTGCCAATGCCGCTTCTGCACCTTCCGATGAACATACATCTACAGTTCCTCCTGTAGCTATAAATACCCAAGCTGTAGCTCCTGTAAAATGCAATTGGACAGAGCACACTTCTCCTGATGGTTATAAATACTATTATAACAGTGTTACCGGTGAGAGCAAGTGGGAGAGACCTGAAGAGCTTTCAGTGATCGAGCAACAACAAAAGCCACGGGTACTCCAGCCTCATAACCAGCCACATCCTCAACTACTATCTACTCCGCAACTCTCTCAAACTCCCCAGCCCCAGCTTCAAACTCAGTTCCAGACACAGATGCCCCACCCTCAGCCGCTACAGCAACCTTCATTCCATTCACAGGAGGGTGCTTATACACAATTGCAGCCAGCCAATAGCTCGGTAAATGATCCTACTCGCTTCCACCAGGGATTTCAGGCGACTCAAGAGTGGGCATGGAAGAATAAATAA 2337 48.52 MNPIFNARTKHIEIDMHFTHCPQEDCTNLGIRFLTSAKLERHRGDRYGPDQDSHPYRHSAAPSRFSDSPVNHHDTRRSPSNFRGGVAGANRRPFDSPPRYSTPAAAGFRPMGTGGGFRPIPGPGGGGFGSSFQPPPVAGQKRGYPFAGRGSSPDHSDGSNFAKLFVGSVPRTATEEIIRPLFEEHGNVIEVALIKDKRTGQQQGCCFVKYTTSEEADRAIRNLHNQHTLPGGAGPIQVRYADGERERLGAVEYKLFVGSLNKQASEKEVKEIFSPYGVVEDVYLMRDEMKQSRGCGFVKYSHRDMALAAINALNGIFTMRGCDQPLSVRFADPKKPRSGDSRGTPAFGGPGFGSRFQAPGPRPMPNFGEFMGDQIPIDVRGFRPPVDAGIHPFGGQLPPRSSEMGPPLNLGGPASGFRGPNQGLVNPASSASQQSASQHPQHGLQASPVLKAVQSPKQLPPSSQLHPHAPSYSQTHTSAVLAQQHNQPQNFNSSGQLPFSQPAPSHESSGLGAQLPLSQAMVQQGASSAAVTHTPLSMNLQSHAAAPNQQQLPTPIQPRQNSPSQLAHMLSQQKQTLQATFQTSQQAFSQLQQLIQPSNQGSTLQPSSQTIKQQSHWAGAVPHTTANAASAPSDEHTSTVPPVAINTQAVAPVKCNWTEHTSPDGYKYYYNSVTGESKWERPEELSVIEQQQKPRVLQPHNQPHPQLLSTPQLSQTPQPQLQTQFQTQMPHPQPLQQPSFHSQEGAYTQLQPANSSVNDPTRFHQGFQATQEWAWKNK 778
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6502737 6516733 + CaPI482276_06g004390.1 Cam06g0439 128739

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0439 778 SUPERFAMILY RNA-binding domain, RBD 145 247 IPR035979 GO:0003676(InterPro)
Cam06g0439 778 MobiDBLite consensus disorder prediction 598 619 - -
Cam06g0439 778 Gene3D - 150 248 IPR012677 -
Cam06g0439 778 MobiDBLite consensus disorder prediction 422 444 - -
Cam06g0439 778 MobiDBLite consensus disorder prediction 331 363 - -
Cam06g0439 778 MobiDBLite consensus disorder prediction 378 511 - -
Cam06g0439 778 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 253 333 IPR000504 GO:0003723(InterPro)
Cam06g0439 778 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 162 243 IPR000504 GO:0003723(InterPro)
Cam06g0439 778 Pfam RNA recognition motif 164 226 IPR000504 GO:0003723(InterPro)
Cam06g0439 778 Pfam RNA recognition motif 255 319 IPR000504 GO:0003723(InterPro)
Cam06g0439 778 Gene3D - 249 340 IPR012677 -
Cam06g0439 778 FunFam Flowering time control protein FCA 249 339 - -
Cam06g0439 778 MobiDBLite consensus disorder prediction 543 573 - -
Cam06g0439 778 Gene3D - 653 695 - -
Cam06g0439 778 SMART ww_5 652 684 IPR001202 GO:0005515(InterPro)
Cam06g0439 778 SMART rrm1_1 163 239 IPR000504 GO:0003723(InterPro)
Cam06g0439 778 SMART rrm1_1 254 329 IPR000504 GO:0003723(InterPro)
Cam06g0439 778 MobiDBLite consensus disorder prediction 456 511 - -
Cam06g0439 778 FunFam flowering time control protein FCA isoform X2 156 248 - -
Cam06g0439 778 ProSiteProfiles WW/rsp5/WWP domain profile. 651 684 IPR001202 GO:0005515(InterPro)
Cam06g0439 778 SUPERFAMILY WW domain 648 684 IPR036020 GO:0005515(InterPro)
Cam06g0439 778 PANTHER TRANSFORMER-2-RELATED 252 345 - -
Cam06g0439 778 MobiDBLite consensus disorder prediction 42 159 - -
Cam06g0439 778 CDD WW 654 684 IPR001202 GO:0005515(InterPro)
Cam06g0439 778 MobiDBLite consensus disorder prediction 698 778 - -
Cam06g0439 778 SUPERFAMILY RNA-binding domain, RBD 253 358 IPR035979 GO:0003676(InterPro)
Cam06g0439 778 Pfam WW domain 655 682 IPR001202 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0439 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0350 Cam-Chr5:3264295 Cam06g0439 Cam-Chr6:6502737 9.10E-13 dispersed
Cam06g0439 Cam-Chr6:6502737 Cam01g0417 Cam-Chr1:4583024 5.30E-13 dispersed
Cam09g0639 Cam-Chr9:6290953 Cam06g0439 Cam-Chr6:6502737 9.90E-41 transposed
Cam10g1135 Cam-Chr10:24466882 Cam06g0439 Cam-Chr6:6502737 4.90E-84 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g46 Blo01g00037 Blo12g00030 Bda03g01189 . Bpe04g01123 . Bma04g01118 Bma05g01000 . Cmo17g00369 . . . . . . . . . . . . . . Cla06g00417 Cam06g0439 Cec06g0445 Cco06g0444 Clacu06g0426 Cmu06g0425 Cre06g1204 . Cone15ag0721 . . . Csa06g01860 . . . . . . . . . . . . . . Cma17g00380 . Car17g00351 Cpe12g00332 Cpe17g00076 Bhi12g01943 . . . . . Lcy12g0865 . . . . . . . Lsi09g01506 . . Cme11g02092
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007086 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 37