Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0441 ATGGAGGAGGAGAAGAAGAAGGAAGAAGTTTTGAGAAATAGAAATCAGATGGGAAATTCTGGATTGTTATTCTCCGATGCGATTATTCCCAATAATAATAATATGTTCGATTTTCCATTCATCGACTCCACTGATTCTTCTTCTTCTTCTTCTTTTAAGCCTTCCACTTTCTTGGATTTGTTAGCCACCCAAGATTACACCCCTTCTTTATTCGATCTTTTCTCTCCTCCGCCGCCGCCTCCTCCTCCTCCTCCTCCACCACCCCCCTCCTCCGCCGTGCCTGAGTCATCCGAAGTCCTCAATACTCCTCCCACTCCTAACTCCTCCTCCGTCTCTTGCTCCTCCACCGAACGCCTTCTCGACGCCGATGATGCCGATCGGGATAAATCGCCTTTCAACAAACAGTTGAAAGCAAAAAAGAAAAATCAAAAAAGGGGAAGAGAACCGAGATTTGCGTTCATGACAAAGAGCGAAGTGGATCATCTAGACGACGGTTACAGATGGCGAAAATACGGTCAAAAAGCCGTTAAAAACAGCCCTTATCCAAGAAGTTATTACCGTTGCACCACCGCCGGCTGCGGCGTCAAAAAACGAGTCGAACGATCCTCGGACGACCCTTCCGTCGTCGTCACCACTTACGAGGGCCAACACACTCATCAAAGTCCAATCATGCCACGTGGAGCTACATCAGCCGGCGCCGCCGCCTTCGCCTCACCCCAACCGCCGCTTGTTTTCCCACAGCCGCAATTATTCCGAAACCACCACCAGCAATATACGTACGCTCCGGCGCCGCCTGTGGACGTTGTCACGTGCGGCCGAGTGTTTGATCCCGTGTTTCATAGTTTTGGTGGTGATGAACGTCGTCGTATTGATGGAATAACTTGTTCTAATTCTGATTCTTTCCAAGACCATGGCCTTCTACAAGATATGATCGTACCCTCCTCCAACTCCTTACAAATCCCAGAAGAAGATAAACAAAATTAA 984 48.48 MEEEKKKEEVLRNRNQMGNSGLLFSDAIIPNNNNMFDFPFIDSTDSSSSSSFKPSTFLDLLATQDYTPSLFDLFSPPPPPPPPPPPPPPSSAVPESSEVLNTPPTPNSSSVSCSSTERLLDADDADRDKSPFNKQLKAKKKNQKRGREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPSVVVTTYEGQHTHQSPIMPRGATSAGAAAFASPQPPLVFPQPQLFRNHHQQYTYAPAPPVDVVTCGRVFDPVFHSFGGDERRRIDGITCSNSDSFQDHGLLQDMIVPSSNSLQIPEEDKQN 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6524678 6526096 - CaPI482276_06g004410.1 Cam06g0441 128741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0441 327 MobiDBLite consensus disorder prediction 1 26 - -
Cam06g0441 327 SUPERFAMILY WRKY DNA-binding domain 154 222 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam06g0441 327 MobiDBLite consensus disorder prediction 94 117 - -
Cam06g0441 327 MobiDBLite consensus disorder prediction 35 54 - -
Cam06g0441 327 Gene3D WRKY domain 146 223 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam06g0441 327 FunFam WRKY transcription factor 57 148 222 - -
Cam06g0441 327 MobiDBLite consensus disorder prediction 68 150 - -
Cam06g0441 327 SMART WRKY_cls 162 221 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam06g0441 327 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 99 230 IPR044810 GO:0003700(InterPro)
Cam06g0441 327 MobiDBLite consensus disorder prediction 72 93 - -
Cam06g0441 327 ProSiteProfiles WRKY domain profile. 157 222 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam06g0441 327 Pfam WRKY DNA -binding domain 163 220 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam06g0441 327 MobiDBLite consensus disorder prediction 119 135 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1905 Cam-Chr2:32116765 Cam06g0441 Cam-Chr6:6524678 1.30E-39 dispersed
Cam06g0441 Cam-Chr6:6524678 Cam09g2282 Cam-Chr9:37291313 4.90E-37 dispersed
Cam08g1480 Cam-Chr8:21065548 Cam06g0441 Cam-Chr6:6524678 5.50E-40 transposed
Cam10g1134 Cam-Chr10:24459105 Cam06g0441 Cam-Chr6:6524678 1.60E-42 wgd
Cam05g0783 Cam-Chr5:6844335 Cam06g0441 Cam-Chr6:6524678 7.10E-42 wgd
Cam06g0441 Cam-Chr6:6524678 Cam09g0494 Cam-Chr9:5096396 1.90E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52101 PF03106 WRKY 6.40E-27 CL0274 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0441 - - - 0.0