Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam06g0442 | ATGGCGTCATCTGTTCTTTCGAATTCCGATCGCGCGCGGGAGTCTTCAAGGAAGCAAAAGAAGAAGAAAAGCCACAGCAACAGAGATCATCATCAAAACCAGAATCATATTAAATGGAAATCTCAAGCTCAACAGGAAATTTACTCGTCCAAGCTCGTACGAGCATTGAATCAAGTGAGACTCGGTCCTTCCAACGAAGCGCCGCCACGCCGCGGTAGAGCTGTTCGCGAGGCTGCCGATAGAGTCCTTGCCGTTGCCGCCAAGGGGAGAACCAGGTGGAGTCGAGCCCTATTAACGAACAGGTTGAAGCTCAAGTTCAGGAAGCCCAAGAGACAGAGGTCAGCATCCACCGCTGGAAACAACCGGTCAAAGAAACCTAGAGTCAGCGTATTGCGGTTGAGACGGAAATCCTTACCGGCGGTACAAAGGAAAGTTAGGGTTCTTGGCCGGCTAGTTCCCGGTTGCCGGAAAGAACCGTTGCCGGTTATTCTGGAAGAAGCTACCGATTACATAGCTGCCCTTGAAATGCAAGTTCGAGCCATGAGTGCCCTTGCTGAGTTGCTTTCGGCTTCAACTTCTGCTGCAGGCTCTAGTTCGACTCCTTCAAGCTGA | 612 | 51.31 | MASSVLSNSDRARESSRKQKKKKSHSNRDHHQNQNHIKWKSQAQQEIYSSKLVRALNQVRLGPSNEAPPRRGRAVREAADRVLAVAAKGRTRWSRALLTNRLKLKFRKPKRQRSASTAGNNRSKKPRVSVLRLRRKSLPAVQRKVRVLGRLVPGCRKEPLPVILEEATDYIAALEMQVRAMSALAELLSASTSAAGSSSTPSS | 203 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 6558181 | 6558792 | - | CaPI482276_06g004420.1 | Cam06g0442 | 128742 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam06g0442 | 203 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 141 | 191 | IPR036638 | GO:0046983(InterPro) | |
| Cam06g0442 | 203 | MobiDBLite | consensus disorder prediction | 104 | 129 | - | - | |
| Cam06g0442 | 203 | CDD | bHLH_AtIBH1_like | 130 | 185 | IPR044549 | GO:0006355(InterPro) | |
| Cam06g0442 | 203 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
| Cam06g0442 | 203 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 125 | 174 | IPR011598 | GO:0046983(InterPro) | |
| Cam06g0442 | 203 | PANTHER | TRANSCRIPTION FACTOR IBH1-LIKE 1 | 35 | 188 | IPR044660 | GO:0006355(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam03g1783 | Cam-Chr3:32963749 | Cam06g0442 | Cam-Chr6:6558181 | 4.10E-37 | dispersed | |
| Cam02g1543 | Cam-Chr2:28396354 | Cam06g0442 | Cam-Chr6:6558181 | 1.90E-31 | wgd | |
| Cam05g0781 | Cam-Chr5:6807385 | Cam06g0442 | Cam-Chr6:6558181 | 1.10E-53 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam06g0442 | - | - | - | 0.0 |