Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0445 ATGCTCCGGGGATTCATGAATCTGCTCTCTCTTTGCTGGAAGCCTTTCGGGCGTCCTACTGATGATTTCACCTCTGGTGGTGTTATTGGGACCAATTGTGGTGCTAAAGACACCAAGGATAGCTTGCTTTGGTTCTATGATTATGGTAAGTATGCTTCCGGTGAATTCTCCATGGCTGTTGTTCAAGCCAACCAAGTTCTTGAGGACCAGAGCCAAATTGAATCTGGCCCTTTTGGTACCTTCGTCGGAATCTACGATGGTCATGGTGGCCCTGACGCTGCTCGTTACGTCTGTGATAACTTGTTTAGACGTTTCCAAGATGAGCAACGAGGAGTTGTGACTCGTGAAACCATTCTGAATGCTTTTCGTCGAACGGAGGAAGGGTTCACGGCTGTTGTGTCAGAGTTGTGGAATACTCGACCCCAGATAGCAACAGTTGGGACATGCTGTCTAGTAGGGGTGATACACGAGCAGACACTCTACATTGCGAGTCTAGGAGATTCTCGTGCTGTGTTAGGGAAGAAAGTTGGCAACACTGGGGAGATTGCTGCCATTCAATTATCGACCGAGCATAATGCAAATCTTGAGGAAATCAGGGAAGAATTAAGCGCCATGCATCATGATGATCCTCAAATCGTGGTTCAAAGGCATGGAGTTTGGAGAGTGAAAGGAATTATACAGGTTTCTAGATCCATTGGGGATGTCTATTTGAAACATGCTCAGTATAATAATGAAAGAATCAATGCTAAATTTAGGCTTCCTGAACCAATTGACAGGCCTATATTGACTGCTGTACCTACGATTATTGCTCACCCTCTTCATCAAAACGATTCTTTTCTCATATTTGCATCCGATGGACTTTGGGAACACCTAACCAATGAAAAAGCAGTGGAGATTGTCCATAATCATCCACGTGCAGGAAGTGCAAAAAGGCTTGTGAAGGCAGCCCTTCAAGAAGCAGCTCGAAAACGAGAGATGCGGTATTCGGATCTCCGAAAGATCGACAAGAAGGTTCGGCGTCATTTTCATGATGACATTAGTGTTATTGTTTTATTTTTCAACCACGATCTTATATCCAGAAGCAATGTCCTCCTAGATCAACCATTATCAGTAAGAAGTGCTTTTGATCATTAA 1134 44.18 MLRGFMNLLSLCWKPFGRPTDDFTSGGVIGTNCGAKDTKDSLLWFYDYGKYASGEFSMAVVQANQVLEDQSQIESGPFGTFVGIYDGHGGPDAARYVCDNLFRRFQDEQRGVVTRETILNAFRRTEEGFTAVVSELWNTRPQIATVGTCCLVGVIHEQTLYIASLGDSRAVLGKKVGNTGEIAAIQLSTEHNANLEEIREELSAMHHDDPQIVVQRHGVWRVKGIIQVSRSIGDVYLKHAQYNNERINAKFRLPEPIDRPILTAVPTIIAHPLHQNDSFLIFASDGLWEHLTNEKAVEIVHNHPRAGSAKRLVKAALQEAARKREMRYSDLRKIDKKVRRHFHDDISVIVLFFNHDLISRSNVLLDQPLSVRSAFDH 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6588004 6591457 - CaPI482276_06g004450.1 Cam06g0445 128745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0445 377 Gene3D - 47 362 IPR036457 -
Cam06g0445 377 SUPERFAMILY PP2C-like 64 354 IPR036457 -
Cam06g0445 377 ProSiteProfiles PPM-type phosphatase domain profile. 52 353 IPR001932 -
Cam06g0445 377 CDD PP2Cc 56 353 IPR001932 -
Cam06g0445 377 PANTHER PROTEIN PHOSPHATASE 53 352 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cam06g0445 377 SMART PP2C_4 49 351 IPR001932 -
Cam06g0445 377 FunFam Probable protein phosphatase 2C 42 46 361 - -
Cam06g0445 377 Pfam Protein phosphatase 2C 80 320 IPR001932 -
Cam06g0445 377 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0445 Cam-Chr6:6588004 Cam10g0048 Cam-Chr10:2101953 2.40E-112 dispersed
Cam06g0445 Cam-Chr6:6588004 Cam01g2107 Cam-Chr1:34044203 3.20E-117 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0445 K01102 - csv:101207284 723.391