Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0449 ATGGGAACTCCACCAGCAGAGGAGCTTCTGAGGAAGATCCAAGAGCTGGAGGAGGGTCAAGCGCATCTCAAGAAAGAGATGTCCAAACTTCTTCTCTCTGGAACTGCCGCCGATTCCAACTCCGACCACCAAATCCACCACCACCATCATCACCATCAACGTTCTCAATCTATTTCACCTCAGCGTTCTAGATTTGCTACGGCTCGGAGAAGAGGTGGCGCTGCTGGAGGTTTAGACGCCGCCGCCGCCGCCTGGAAAAGAGGCTCTTCATCATTTCGACATTCTTCTCCACTTCAGAGAGAAAGTAGGACTCGTGACCCTTTGAATGCCGCCGTCGCCGGAGGTGGCGGCGGCGGCGGCGGCTCTGGCCCCGCCGCTGTGAATTTCACCAACAAACAGTATCTGAATATCTTGCAGTCAATGGGACAGCCTGTTTATATTTTTGACCTTAATTATCATATAATTTACTGGAATCGAGCAGCTGAAATTGTATATGGGTATTCTGCGGCGGAGGCTCTTGGCCAGGACGCCATTGAGCTTCTAGTAGATCCTGAGGATTTCGCCATTGCAAACCATGTAATTCTTCGTGTCATGGCGGGTGAGAATTGGACTGGTCACTTACCTGTAAAGAACAAGATGGGGCAAAAATTTATAGTTGTTGCCGCCAACACTCCATTCTACGACGATGGTGCATTGGTTGGGATTATCTGTGTATCGAGCGATTTGCGGCCATTTCAAGATTTGAAGATTCCTCTATCAGTAGGTTCTAAACAGCAGGATGCAGATTCGAGCATGGCCCGATCACGAATCCCAGTTTCAGCTAAGCTTGGTCTTGATCCTCAGCAGCCTCTTCAAGTGGCAATTGCTTCAAAGTTATCCAACTTGGCATCAAAGGTAAGCAACAAAGTCAAGTTGAAAATTCGAACTGGAGAAAACAGTTCGGATCGTGAAGGTGGAAGTGGAGATAGTTATCACTCTGATCTTGGCTATCCAGAGGCAGTTCTTTGTGACCATCGGGACGATGCAAATTCGAGCGGAGCTAGCACGCCTCGAGGAGATTCCACGGCTCATGGTGCATTCTCTCAGGTTGAAGAGAAGTTATCTGGCAAACTGGTCAGGGATTCTGGTGATGAGGTTAAAGGGAAGCCTACCATCCAGAAGATCTTATCCTCAAAGGCAGAAGAATGGATTGCCAAGAAAGGCTTATCCTGGCCTTGGAAAGGGACCGAGCAGGAAGGAGGATCTGAAACAAAGGCAGCCCGTTTTGTTTGGCCTTGGTTACAAATTGATCAAGAAGCCGAACCAGCTAATCAAAAGAGTTCCTCTATTTCTGGGAAACCAGAAATGCAGCAAAACGACAGTCATCGAGCAGTCAATAACGAGGCCTCAGGATCGTGGTCGTCGTTCAATGTTAACAGCACTAGCAGTGTCAGTAGCTGTGGAAGTACCAGTAGTAGTGCTGTCAACAAAGTTGACACAGATATAGACTGTTTGGATCATGAAATCTTGTGGGAAGACCTTACCATCGGGGAGCAAATAGGGCAAGGTTCTTGTGGAACTGTCTATCATGCACTGTGGTATGGATCAGACGTTGCCGTCAAAGTGTTCTCCAAACAAGAGTATTCAGATGATGTGATTCTCTCCTTCAAACAGGAGGTATCCCTGATGAAAAAGCTTAGACACCCCAATATTCTTCTCTTTATGGGAGTTGTGACTTCACCTCAGCGTCTCTGCATTGTCACAGAATTCCTTCCACGTGGAAGTTTGTTTCGTTTACTACAGAGGAACACAGGCAAATTAGATTGGAGACGCCGTGTTCATATGGCTTTGGACATTGCGCGAGGCATGAACTATCTTCACCATTGCAATCCACCTATTATTCACCGAGATTTGAAATCATCGAACCTCTTAATCGATAAAAACTGGACTGTGAAGGTTGGAGATTTTGGTCTATCTCGGCTTAAGCATGAGACTTATCTAACAACTAAGACAGGAAAGGGCACGCCTCAATGGATGGCACCTGAAGTTCTTCGTAATGAGCCCTCGGATGAGAAGTCCGACATATACAGTTTTGGAGTCATATTGTGGGAGCTTGCAACTGAGAAGATCCCTTGGGAAAATCTCAATTCGATGCAGGTAATTGGTGCTGTTGGGTTCATGAACCAACGTCTTGAAATCCCCAAGGATGTGGATCCACAATGGGCTTCTATTATTGAGAGCTGCTGGCAAAGCGAACCTTCAAACCGGCCATCATTCCAAGTTCTGATAGAAAAGCTTAGAGAAATGCAGAGGAAGTTTGCTATGCAATTACAGGCAGCTCGTTCTGGTGGAGAGAATAATAATAATAATAATAATAATAATAATAATAATAATAATAACAACAACAACATCCCTCAAAAGGAAACATAA 2409 45.91 MGTPPAEELLRKIQELEEGQAHLKKEMSKLLLSGTAADSNSDHQIHHHHHHHQRSQSISPQRSRFATARRRGGAAGGLDAAAAAWKRGSSSFRHSSPLQRESRTRDPLNAAVAGGGGGGGGSGPAAVNFTNKQYLNILQSMGQPVYIFDLNYHIIYWNRAAEIVYGYSAAEALGQDAIELLVDPEDFAIANHVILRVMAGENWTGHLPVKNKMGQKFIVVAANTPFYDDGALVGIICVSSDLRPFQDLKIPLSVGSKQQDADSSMARSRIPVSAKLGLDPQQPLQVAIASKLSNLASKVSNKVKLKIRTGENSSDREGGSGDSYHSDLGYPEAVLCDHRDDANSSGASTPRGDSTAHGAFSQVEEKLSGKLVRDSGDEVKGKPTIQKILSSKAEEWIAKKGLSWPWKGTEQEGGSETKAARFVWPWLQIDQEAEPANQKSSSISGKPEMQQNDSHRAVNNEASGSWSSFNVNSTSSVSSCGSTSSSAVNKVDTDIDCLDHEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFKQEVSLMKKLRHPNILLFMGVVTSPQRLCIVTEFLPRGSLFRLLQRNTGKLDWRRRVHMALDIARGMNYLHHCNPPIIHRDLKSSNLLIDKNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDIYSFGVILWELATEKIPWENLNSMQVIGAVGFMNQRLEIPKDVDPQWASIIESCWQSEPSNRPSFQVLIEKLREMQRKFAMQLQAARSGGENNNNNNNNNNNNNNNNNNIPQKET 802
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6628978 6633573 - CaPI482276_06g004490.1 Cam06g0449 128749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0449 802 MobiDBLite consensus disorder prediction 89 121 - -
Cam06g0449 802 Gene3D Phosphorylase Kinase; domain 1 500 584 - -
Cam06g0449 802 NCBIfam PAS domain S-box protein 132 242 IPR000014 -
Cam06g0449 802 SUPERFAMILY Protein kinase-like (PK-like) 490 757 IPR011009 -
Cam06g0449 802 PANTHER SERINE-THREONINE PROTEIN KINASE 65 762 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cam06g0449 802 CDD PAS 141 242 IPR000014 -
Cam06g0449 802 SMART pas_2 132 199 IPR000014 -
Cam06g0449 802 MobiDBLite consensus disorder prediction 771 802 - -
Cam06g0449 802 ProSitePatterns Serine/Threonine protein kinases active-site signature. 626 638 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam06g0449 802 MobiDBLite consensus disorder prediction 433 463 - -
Cam06g0449 802 Pfam PAS fold 133 241 IPR013767 GO:0006355(InterPro)
Cam06g0449 802 MobiDBLite consensus disorder prediction 773 802 - -
Cam06g0449 802 PRINTS Tyrosine kinase catalytic domain signature 686 708 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam06g0449 802 PRINTS Tyrosine kinase catalytic domain signature 581 594 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam06g0449 802 PRINTS Tyrosine kinase catalytic domain signature 667 677 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam06g0449 802 PRINTS Tyrosine kinase catalytic domain signature 730 752 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam06g0449 802 PRINTS Tyrosine kinase catalytic domain signature 620 638 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam06g0449 802 MobiDBLite consensus disorder prediction 35 72 - -
Cam06g0449 802 FunFam PAS domain-containing protein tyrosine kinase 500 584 - -
Cam06g0449 802 CDD STKc_MAP3K-like 513 759 - -
Cam06g0449 802 ProSiteProfiles Protein kinase domain profile. 507 767 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g0449 802 FunFam PAS domain-containing protein tyrosine kinase family protein 585 776 - -
Cam06g0449 802 SMART serkin_6 507 767 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g0449 802 Coils Coil 6 26 - -
Cam06g0449 802 Gene3D Transferase(Phosphotransferase) domain 1 585 802 - -
Cam06g0449 802 MobiDBLite consensus disorder prediction 338 379 - -
Cam06g0449 802 SUPERFAMILY PYP-like sensor domain (PAS domain) 134 241 IPR035965 -
Cam06g0449 802 Gene3D PAS domain 142 244 - -
Cam06g0449 802 Pfam Protein tyrosine and serine/threonine kinase 507 759 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam06g0449 802 ProSiteProfiles PAS repeat profile. 130 201 IPR000014 -
Cam06g0449 802 MobiDBLite consensus disorder prediction 342 356 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0449 Cam-Chr6:6628978 Cam10g1900 Cam-Chr10:33075448 1.10E-90 dispersed
Cam06g0449 Cam-Chr6:6628978 Cam04g1004 Cam-Chr4:24214167 5.00E-91 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85246 PF07714 PK_Tyr_Ser-Thr 3.70E-69 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0449 - - - 0.0