Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam06g0449 | ATGGGAACTCCACCAGCAGAGGAGCTTCTGAGGAAGATCCAAGAGCTGGAGGAGGGTCAAGCGCATCTCAAGAAAGAGATGTCCAAACTTCTTCTCTCTGGAACTGCCGCCGATTCCAACTCCGACCACCAAATCCACCACCACCATCATCACCATCAACGTTCTCAATCTATTTCACCTCAGCGTTCTAGATTTGCTACGGCTCGGAGAAGAGGTGGCGCTGCTGGAGGTTTAGACGCCGCCGCCGCCGCCTGGAAAAGAGGCTCTTCATCATTTCGACATTCTTCTCCACTTCAGAGAGAAAGTAGGACTCGTGACCCTTTGAATGCCGCCGTCGCCGGAGGTGGCGGCGGCGGCGGCGGCTCTGGCCCCGCCGCTGTGAATTTCACCAACAAACAGTATCTGAATATCTTGCAGTCAATGGGACAGCCTGTTTATATTTTTGACCTTAATTATCATATAATTTACTGGAATCGAGCAGCTGAAATTGTATATGGGTATTCTGCGGCGGAGGCTCTTGGCCAGGACGCCATTGAGCTTCTAGTAGATCCTGAGGATTTCGCCATTGCAAACCATGTAATTCTTCGTGTCATGGCGGGTGAGAATTGGACTGGTCACTTACCTGTAAAGAACAAGATGGGGCAAAAATTTATAGTTGTTGCCGCCAACACTCCATTCTACGACGATGGTGCATTGGTTGGGATTATCTGTGTATCGAGCGATTTGCGGCCATTTCAAGATTTGAAGATTCCTCTATCAGTAGGTTCTAAACAGCAGGATGCAGATTCGAGCATGGCCCGATCACGAATCCCAGTTTCAGCTAAGCTTGGTCTTGATCCTCAGCAGCCTCTTCAAGTGGCAATTGCTTCAAAGTTATCCAACTTGGCATCAAAGGTAAGCAACAAAGTCAAGTTGAAAATTCGAACTGGAGAAAACAGTTCGGATCGTGAAGGTGGAAGTGGAGATAGTTATCACTCTGATCTTGGCTATCCAGAGGCAGTTCTTTGTGACCATCGGGACGATGCAAATTCGAGCGGAGCTAGCACGCCTCGAGGAGATTCCACGGCTCATGGTGCATTCTCTCAGGTTGAAGAGAAGTTATCTGGCAAACTGGTCAGGGATTCTGGTGATGAGGTTAAAGGGAAGCCTACCATCCAGAAGATCTTATCCTCAAAGGCAGAAGAATGGATTGCCAAGAAAGGCTTATCCTGGCCTTGGAAAGGGACCGAGCAGGAAGGAGGATCTGAAACAAAGGCAGCCCGTTTTGTTTGGCCTTGGTTACAAATTGATCAAGAAGCCGAACCAGCTAATCAAAAGAGTTCCTCTATTTCTGGGAAACCAGAAATGCAGCAAAACGACAGTCATCGAGCAGTCAATAACGAGGCCTCAGGATCGTGGTCGTCGTTCAATGTTAACAGCACTAGCAGTGTCAGTAGCTGTGGAAGTACCAGTAGTAGTGCTGTCAACAAAGTTGACACAGATATAGACTGTTTGGATCATGAAATCTTGTGGGAAGACCTTACCATCGGGGAGCAAATAGGGCAAGGTTCTTGTGGAACTGTCTATCATGCACTGTGGTATGGATCAGACGTTGCCGTCAAAGTGTTCTCCAAACAAGAGTATTCAGATGATGTGATTCTCTCCTTCAAACAGGAGGTATCCCTGATGAAAAAGCTTAGACACCCCAATATTCTTCTCTTTATGGGAGTTGTGACTTCACCTCAGCGTCTCTGCATTGTCACAGAATTCCTTCCACGTGGAAGTTTGTTTCGTTTACTACAGAGGAACACAGGCAAATTAGATTGGAGACGCCGTGTTCATATGGCTTTGGACATTGCGCGAGGCATGAACTATCTTCACCATTGCAATCCACCTATTATTCACCGAGATTTGAAATCATCGAACCTCTTAATCGATAAAAACTGGACTGTGAAGGTTGGAGATTTTGGTCTATCTCGGCTTAAGCATGAGACTTATCTAACAACTAAGACAGGAAAGGGCACGCCTCAATGGATGGCACCTGAAGTTCTTCGTAATGAGCCCTCGGATGAGAAGTCCGACATATACAGTTTTGGAGTCATATTGTGGGAGCTTGCAACTGAGAAGATCCCTTGGGAAAATCTCAATTCGATGCAGGTAATTGGTGCTGTTGGGTTCATGAACCAACGTCTTGAAATCCCCAAGGATGTGGATCCACAATGGGCTTCTATTATTGAGAGCTGCTGGCAAAGCGAACCTTCAAACCGGCCATCATTCCAAGTTCTGATAGAAAAGCTTAGAGAAATGCAGAGGAAGTTTGCTATGCAATTACAGGCAGCTCGTTCTGGTGGAGAGAATAATAATAATAATAATAATAATAATAATAATAATAATAATAACAACAACAACATCCCTCAAAAGGAAACATAA | 2409 | 45.91 | MGTPPAEELLRKIQELEEGQAHLKKEMSKLLLSGTAADSNSDHQIHHHHHHHQRSQSISPQRSRFATARRRGGAAGGLDAAAAAWKRGSSSFRHSSPLQRESRTRDPLNAAVAGGGGGGGGSGPAAVNFTNKQYLNILQSMGQPVYIFDLNYHIIYWNRAAEIVYGYSAAEALGQDAIELLVDPEDFAIANHVILRVMAGENWTGHLPVKNKMGQKFIVVAANTPFYDDGALVGIICVSSDLRPFQDLKIPLSVGSKQQDADSSMARSRIPVSAKLGLDPQQPLQVAIASKLSNLASKVSNKVKLKIRTGENSSDREGGSGDSYHSDLGYPEAVLCDHRDDANSSGASTPRGDSTAHGAFSQVEEKLSGKLVRDSGDEVKGKPTIQKILSSKAEEWIAKKGLSWPWKGTEQEGGSETKAARFVWPWLQIDQEAEPANQKSSSISGKPEMQQNDSHRAVNNEASGSWSSFNVNSTSSVSSCGSTSSSAVNKVDTDIDCLDHEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFKQEVSLMKKLRHPNILLFMGVVTSPQRLCIVTEFLPRGSLFRLLQRNTGKLDWRRRVHMALDIARGMNYLHHCNPPIIHRDLKSSNLLIDKNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDIYSFGVILWELATEKIPWENLNSMQVIGAVGFMNQRLEIPKDVDPQWASIIESCWQSEPSNRPSFQVLIEKLREMQRKFAMQLQAARSGGENNNNNNNNNNNNNNNNNNIPQKET | 802 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 6628978 | 6633573 | - | CaPI482276_06g004490.1 | Cam06g0449 | 128749 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam06g0449 | 802 | MobiDBLite | consensus disorder prediction | 89 | 121 | - | - | |
Cam06g0449 | 802 | Gene3D | Phosphorylase Kinase; domain 1 | 500 | 584 | - | - | |
Cam06g0449 | 802 | NCBIfam | PAS domain S-box protein | 132 | 242 | IPR000014 | - | |
Cam06g0449 | 802 | SUPERFAMILY | Protein kinase-like (PK-like) | 490 | 757 | IPR011009 | - | |
Cam06g0449 | 802 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 65 | 762 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Cam06g0449 | 802 | CDD | PAS | 141 | 242 | IPR000014 | - | |
Cam06g0449 | 802 | SMART | pas_2 | 132 | 199 | IPR000014 | - | |
Cam06g0449 | 802 | MobiDBLite | consensus disorder prediction | 771 | 802 | - | - | |
Cam06g0449 | 802 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 626 | 638 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cam06g0449 | 802 | MobiDBLite | consensus disorder prediction | 433 | 463 | - | - | |
Cam06g0449 | 802 | Pfam | PAS fold | 133 | 241 | IPR013767 | GO:0006355(InterPro) | |
Cam06g0449 | 802 | MobiDBLite | consensus disorder prediction | 773 | 802 | - | - | |
Cam06g0449 | 802 | PRINTS | Tyrosine kinase catalytic domain signature | 686 | 708 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cam06g0449 | 802 | PRINTS | Tyrosine kinase catalytic domain signature | 581 | 594 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cam06g0449 | 802 | PRINTS | Tyrosine kinase catalytic domain signature | 667 | 677 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cam06g0449 | 802 | PRINTS | Tyrosine kinase catalytic domain signature | 730 | 752 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cam06g0449 | 802 | PRINTS | Tyrosine kinase catalytic domain signature | 620 | 638 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cam06g0449 | 802 | MobiDBLite | consensus disorder prediction | 35 | 72 | - | - | |
Cam06g0449 | 802 | FunFam | PAS domain-containing protein tyrosine kinase | 500 | 584 | - | - | |
Cam06g0449 | 802 | CDD | STKc_MAP3K-like | 513 | 759 | - | - | |
Cam06g0449 | 802 | ProSiteProfiles | Protein kinase domain profile. | 507 | 767 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam06g0449 | 802 | FunFam | PAS domain-containing protein tyrosine kinase family protein | 585 | 776 | - | - | |
Cam06g0449 | 802 | SMART | serkin_6 | 507 | 767 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam06g0449 | 802 | Coils | Coil | 6 | 26 | - | - | |
Cam06g0449 | 802 | Gene3D | Transferase(Phosphotransferase) domain 1 | 585 | 802 | - | - | |
Cam06g0449 | 802 | MobiDBLite | consensus disorder prediction | 338 | 379 | - | - | |
Cam06g0449 | 802 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 134 | 241 | IPR035965 | - | |
Cam06g0449 | 802 | Gene3D | PAS domain | 142 | 244 | - | - | |
Cam06g0449 | 802 | Pfam | Protein tyrosine and serine/threonine kinase | 507 | 759 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cam06g0449 | 802 | ProSiteProfiles | PAS repeat profile. | 130 | 201 | IPR000014 | - | |
Cam06g0449 | 802 | MobiDBLite | consensus disorder prediction | 342 | 356 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam06g0449 | Cam-Chr6:6628978 | Cam10g1900 | Cam-Chr10:33075448 | 1.10E-90 | dispersed | |
Cam06g0449 | Cam-Chr6:6628978 | Cam04g1004 | Cam-Chr4:24214167 | 5.00E-91 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
85246 | PF07714 | PK_Tyr_Ser-Thr | 3.70E-69 | CL0016 | Cam | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam06g0449 | - | - | - | 0.0 |