Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0452 ATGGTATTTCTTTTTGGTCTTCTTTTATCCAACGTCATTCCTACGATTGTTGGTACGACGCCATCAAACAACGTAGAATCGAGTATCTGTCCAAAAACTAGGAATCCATCATTTTGCGCAAGCGTGTTGAAATCTGGTGGCAGCACAGACCTAAAAGCACTAGCCACTTACACCCTAAACCTTGCTCTTACAAATGCTGGAAAATCTATGACCCTAGCCAAGTCACTTGCATCCACAACAACCAATTCTCAACTTAAGAAAGTATATTTATCTTGCTCTGAGAATTACAATAATGCCAAGGGCGACGTTGAAAATGCTCAAAACTATTTGGCCACGAGTGACTTTAATGGTGTTAATCTTGCAACTTCTGGCGTCATGACGGCAGTTGACGACTGTCAAGATAGCTTCGAGCAGCCGCTGATAGACACGTCATTGCTTTCAGAGAATGGCAAGACTTTGATAGATATTTGTAGCATTATTTTAGTTATATCTAATCTTCTTCCTGGGCCCATATAA 516 40.7 MVFLFGLLLSNVIPTIVGTTPSNNVESSICPKTRNPSFCASVLKSGGSTDLKALATYTLNLALTNAGKSMTLAKSLASTTTNSQLKKVYLSCSENYNNAKGDVENAQNYLATSDFNGVNLATSGVMTAVDDCQDSFEQPLIDTSLLSENGKTLIDICSIILVISNLLPGPI 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6666387 6666902 - CaPI482276_06g004520.1 Cam06g0452 128752

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0452 171 Pfam Plant invertase/pectin methylesterase inhibitor 27 163 IPR006501 GO:0004857(InterPro)
Cam06g0452 171 NCBIfam pectinesterase inhibitor domain 3 166 IPR006501 GO:0004857(InterPro)
Cam06g0452 171 FunFam Invertase/pectin methylesterase inhibitor family protein 23 167 - -
Cam06g0452 171 Gene3D Invertase/pectin methylesterase inhibitor family protein 22 168 IPR035513 -
Cam06g0452 171 PANTHER PECTINESTERASE INHIBITOR-LIKE 17 167 IPR052421 -
Cam06g0452 171 SMART PMEI_2 20 163 IPR006501 GO:0004857(InterPro)
Cam06g0452 171 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 168 IPR035513 -
Cam06g0452 171 CDD PMEI 29 167 IPR034086 GO:0043086(InterPro)|GO:0046910(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0452 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0452 Cam-Chr6:6666387 Cam11g1146 Cam-Chr11:22495043 2.80E-60 dispersed
Cam06g0451 Cam-Chr6:6662336 Cam06g0452 Cam-Chr6:6666387 4.20E-48 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g67 . . . . . Bpe14g01100 . . . . . . . . . . . . . . . . . . Cla06g00429 Cam06g0452 Cec06g0459 Cco06g0458 Clacu06g0439 Cmu06g0440 Cre06g1217 . . . . . . . . . . . Bda13g00216 . . Bma02g00928 . . . . . . . . Cpe12g00319 . Bhi12g01927 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000169 1 5 1 1 0 8 0 5 6 6 3 7 6 46 17 9 7 2 3 5 13 2 4 4 6 4 5 5 9 0 190