Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam06g0476 | ATGGATCTGAGCCACATGAAAGGATCGATGCCGATGCCGATGCCGACGCCGACTTCAATTTCTGCTAGAAAATCCACAGATATGGTTTCTGATCAGTTCCCGGCCGGTCTTCGCGTCCTGGTTGTTGACGACGATCCTACCTGTCTCAGGATCTTGGAAAAGATGCTTCAGAATTGCTGCTATGCCGTGACGAAATGCAACCGGGCGGAGATTGCGTTATCCATGCTTCGTGAGAACAAAAATGGTTATGATATTGTTTTAAGCGATGTGCATATGCCTGACATGGATGGATTCAAGCTTCTAGAGCAAGTTGGGCTGGAGATGGATTTGCCTGTTATCATGATGTCAGCTGATGATGGGAAGAATGTTGTGATGAAGGGAGTGATTCATGGTGCTTGTGATTACCTGATCAAACCCGTTCGGATAGAAGCACTCAGGAACATATGGCAACATGTAGTTCGAAAGAGAAAGACTGAATGGAAGGATTTAGAGCAATCCGGTAGCGTGGATGATGGAGATCGAGAGCAAAATCTGTCTGAAGGTGCAAATTATTCGTCTTCGGCATACGAAGGAAGTTGGAACAGCTCGAAGAGGAGGAGGGATGCTGAAGAAGAGCCCGAGGAGAGGGACGATACATCGACGTTAAAGAAGCCGAGGGTGGTATGGTCAGTTGAGCTCCATCAACAGTTTGTCGCTGCAGTTAATCAGCTAGGCATTGACAAGGCTGTCCCTAAGAAGATATTGGAGTTGATGAATGTTCCGGGGCTTACTAGAGAAAATGTTGCCAGTCATCTTCAGAAGTATCGCTTATATCTTAGAAGGCTTAGTGGAGTATCACCACATCAAAGTAATTTGAACAATTCTTTTATCAACCCCCAAGACCCACCTTATGGGTCAATGGCCTCATTCAATGGGATTGATCTTCAAACGCTTTCGGTCACCGGCCAACTCTCGCCACAAAGTCTTGCTGCCCTCCAAGCAACGGGACTTCATAGGCCAACCGCAAAATCTAGCATATCCATGGCTCTTGTTGATCAGAACAACATATTCAGTTTTGAAAACCCAAAATTGAGGTTTGTTGAGGACCAAACACAGCACCTAAATAACAGTAAACCAGTAAATTTGTTTCATGGGATTCCAACAAAAATGGAGCCAAAGCAGCTTGCCAATATGCAGCATCCTTCTGTGCAGTCTCAGGGGAACATAAATATGCAACTCAATATCAAGAGCGAACATGGTGGAACTCAATTAATGCATTTGTCTCAACACCAAACTGTGGGACAGACTCTAAGTAACTCTCCTGCTAGCCACTTGAGGAAGCCGATCGTATCAGGTAACGTTACGAGGGGAAATGGGACTGCTGATAATAGCCACAGATCTGGATACAACCTAGTTTCGCCAACATCGGTGATGGTGAACTATCCAATGAGCCAAACCACGGAATTGTCCAACAATTTTTCTCTTCAGAGTAATTCATCGGTATCTACCTTGACTTGTAAAGGGGTATTTCAAGAAGAGATTAGTTCAGATCTAAAAGTATCGGGCGGACTAATGTTGAGTTATGATGTTTTTAGTGACTTGCATCTGCAGAAATCCCATGACTGGGATTCTCAAAACGTAAGCACCTTGGCCTTTGGTAATTCTCACCATGGGAACTTCATACAGGATAGCTTTGATATCCCACCCTCCACTTTAATTCATCATGGTTTTCCTTCAAGCCAAACAAATGGACAAAACCAAAATTCGTCAGTCATTGGAAAGACTATCTTTTCCTTTTCGGATTCAACTCAACCCGAAAATCCACAAAGTATGGCCCAAAACTCGCTTCTCGATCCTGTGGAGGTCAAAACTCAGAGAATCCCAGATGCAAGCTATCAAACTGACCTCTTATCTGAGGACTTTGGCCAGGATGAACTTCTTGGCGTCTTTCTCAAACAACAGCAACAAGGAGACAACGGATCGGTCGGATTAGATGACAGAGATTTCAATGCAAGTCTAAAGCAATCTTCCTCAGAATGCTCACACAGAAGATGCAAATCTTACTCCAACTTCGATTGGCGTTCAAAGCCTGAAGCGATTTATTTTAGGATGCGTGTGAAACTGTTTGTTTGTAACGGGCACATCGCTGGATTGTCGATGCAAGGCTCGGCTCGGCTCCATTGTATTTGGAACCAGTTAGGAGATTTCTCATCTCTCTAA | 2199 | 44.34 | MDLSHMKGSMPMPMPTPTSISARKSTDMVSDQFPAGLRVLVVDDDPTCLRILEKMLQNCCYAVTKCNRAEIALSMLRENKNGYDIVLSDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDGKNVVMKGVIHGACDYLIKPVRIEALRNIWQHVVRKRKTEWKDLEQSGSVDDGDREQNLSEGANYSSSAYEGSWNSSKRRRDAEEEPEERDDTSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSPHQSNLNNSFINPQDPPYGSMASFNGIDLQTLSVTGQLSPQSLAALQATGLHRPTAKSSISMALVDQNNIFSFENPKLRFVEDQTQHLNNSKPVNLFHGIPTKMEPKQLANMQHPSVQSQGNINMQLNIKSEHGGTQLMHLSQHQTVGQTLSNSPASHLRKPIVSGNVTRGNGTADNSHRSGYNLVSPTSVMVNYPMSQTTELSNNFSLQSNSSVSTLTCKGVFQEEISSDLKVSGGLMLSYDVFSDLHLQKSHDWDSQNVSTLAFGNSHHGNFIQDSFDIPPSTLIHHGFPSSQTNGQNQNSSVIGKTIFSFSDSTQPENPQSMAQNSLLDPVEVKTQRIPDASYQTDLLSEDFGQDELLGVFLKQQQQGDNGSVGLDDRDFNASLKQSSSECSHRRCKSYSNFDWRSKPEAIYFRMRVKLFVCNGHIAGLSMQGSARLHCIWNQLGDFSSL | 732 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 6887947 | 6892180 | - | CaPI482276_06g004760.1 | Cam06g0476 | 128776 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam06g0476 | 732 | FunFam | Two-component response regulator | 37 | 174 | - | - | |
Cam06g0476 | 732 | Gene3D | - | 214 | 276 | - | - | |
Cam06g0476 | 732 | ProSiteProfiles | Response regulatory domain profile. | 38 | 153 | IPR001789 | GO:0000160(InterPro) | |
Cam06g0476 | 732 | MobiDBLite | consensus disorder prediction | 178 | 193 | - | - | |
Cam06g0476 | 732 | MobiDBLite | consensus disorder prediction | 194 | 214 | - | - | |
Cam06g0476 | 732 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 217 | 270 | IPR006447 | GO:0003677(InterPro) | |
Cam06g0476 | 732 | FunFam | Two-component response regulator | 213 | 276 | - | - | |
Cam06g0476 | 732 | SUPERFAMILY | CheY-like | 36 | 160 | IPR011006 | - | |
Cam06g0476 | 732 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 216 | 273 | IPR017930 | - | |
Cam06g0476 | 732 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 34 | 291 | IPR045279 | GO:0009736(InterPro) | |
Cam06g0476 | 732 | SUPERFAMILY | Homeodomain-like | 214 | 274 | IPR009057 | - | |
Cam06g0476 | 732 | MobiDBLite | consensus disorder prediction | 160 | 177 | - | - | |
Cam06g0476 | 732 | MobiDBLite | consensus disorder prediction | 446 | 462 | - | - | |
Cam06g0476 | 732 | Pfam | Myb-like DNA-binding domain | 219 | 269 | IPR001005 | - | |
Cam06g0476 | 732 | MobiDBLite | consensus disorder prediction | 160 | 214 | - | - | |
Cam06g0476 | 732 | SMART | REC_2 | 37 | 149 | IPR001789 | GO:0000160(InterPro) | |
Cam06g0476 | 732 | MobiDBLite | consensus disorder prediction | 429 | 462 | - | - | |
Cam06g0476 | 732 | CDD | REC_typeB_ARR-like | 39 | 153 | - | - | |
Cam06g0476 | 732 | PIRSF | RR_ARR_type-B | 19 | 678 | IPR017053 | GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro) | |
Cam06g0476 | 732 | Gene3D | - | 37 | 171 | - | - | |
Cam06g0476 | 732 | Pfam | Response regulator receiver domain | 39 | 147 | IPR001789 | GO:0000160(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam04g0579 | Cam-Chr4:19485636 | Cam06g0476 | Cam-Chr6:6887947 | 3.50E-21 | dispersed | |
Cam05g0934 | Cam-Chr5:8446087 | Cam06g0476 | Cam-Chr6:6887947 | 6.40E-37 | dispersed | |
Cam06g0156 | Cam-Chr6:3454490 | Cam06g0476 | Cam-Chr6:6887947 | 2.50E-41 | dispersed | |
Cam06g0218 | Cam-Chr6:3976256 | Cam06g0476 | Cam-Chr6:6887947 | 8.90E-27 | dispersed | |
Cam06g0476 | Cam-Chr6:6887947 | Cam06g1357 | Cam-Chr6:24953391 | 1.50E-81 | dispersed | |
Cam09g0543 | Cam-Chr9:5454036 | Cam06g0476 | Cam-Chr6:6887947 | 3.00E-26 | transposed | |
Cam05g0746 | Cam-Chr5:6486038 | Cam06g0476 | Cam-Chr6:6887947 | 1.60E-215 | wgd | |
Cam06g0476 | Cam-Chr6:6887947 | Cam09g0542 | Cam-Chr9:5449780 | 1.90E-12 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52106 | PF00072 | Response_reg | 7.00E-22 | CL0304 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam06g0476 | K14491 | - | csv:101210138 | 1201.04 |