Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0476 ATGGATCTGAGCCACATGAAAGGATCGATGCCGATGCCGATGCCGACGCCGACTTCAATTTCTGCTAGAAAATCCACAGATATGGTTTCTGATCAGTTCCCGGCCGGTCTTCGCGTCCTGGTTGTTGACGACGATCCTACCTGTCTCAGGATCTTGGAAAAGATGCTTCAGAATTGCTGCTATGCCGTGACGAAATGCAACCGGGCGGAGATTGCGTTATCCATGCTTCGTGAGAACAAAAATGGTTATGATATTGTTTTAAGCGATGTGCATATGCCTGACATGGATGGATTCAAGCTTCTAGAGCAAGTTGGGCTGGAGATGGATTTGCCTGTTATCATGATGTCAGCTGATGATGGGAAGAATGTTGTGATGAAGGGAGTGATTCATGGTGCTTGTGATTACCTGATCAAACCCGTTCGGATAGAAGCACTCAGGAACATATGGCAACATGTAGTTCGAAAGAGAAAGACTGAATGGAAGGATTTAGAGCAATCCGGTAGCGTGGATGATGGAGATCGAGAGCAAAATCTGTCTGAAGGTGCAAATTATTCGTCTTCGGCATACGAAGGAAGTTGGAACAGCTCGAAGAGGAGGAGGGATGCTGAAGAAGAGCCCGAGGAGAGGGACGATACATCGACGTTAAAGAAGCCGAGGGTGGTATGGTCAGTTGAGCTCCATCAACAGTTTGTCGCTGCAGTTAATCAGCTAGGCATTGACAAGGCTGTCCCTAAGAAGATATTGGAGTTGATGAATGTTCCGGGGCTTACTAGAGAAAATGTTGCCAGTCATCTTCAGAAGTATCGCTTATATCTTAGAAGGCTTAGTGGAGTATCACCACATCAAAGTAATTTGAACAATTCTTTTATCAACCCCCAAGACCCACCTTATGGGTCAATGGCCTCATTCAATGGGATTGATCTTCAAACGCTTTCGGTCACCGGCCAACTCTCGCCACAAAGTCTTGCTGCCCTCCAAGCAACGGGACTTCATAGGCCAACCGCAAAATCTAGCATATCCATGGCTCTTGTTGATCAGAACAACATATTCAGTTTTGAAAACCCAAAATTGAGGTTTGTTGAGGACCAAACACAGCACCTAAATAACAGTAAACCAGTAAATTTGTTTCATGGGATTCCAACAAAAATGGAGCCAAAGCAGCTTGCCAATATGCAGCATCCTTCTGTGCAGTCTCAGGGGAACATAAATATGCAACTCAATATCAAGAGCGAACATGGTGGAACTCAATTAATGCATTTGTCTCAACACCAAACTGTGGGACAGACTCTAAGTAACTCTCCTGCTAGCCACTTGAGGAAGCCGATCGTATCAGGTAACGTTACGAGGGGAAATGGGACTGCTGATAATAGCCACAGATCTGGATACAACCTAGTTTCGCCAACATCGGTGATGGTGAACTATCCAATGAGCCAAACCACGGAATTGTCCAACAATTTTTCTCTTCAGAGTAATTCATCGGTATCTACCTTGACTTGTAAAGGGGTATTTCAAGAAGAGATTAGTTCAGATCTAAAAGTATCGGGCGGACTAATGTTGAGTTATGATGTTTTTAGTGACTTGCATCTGCAGAAATCCCATGACTGGGATTCTCAAAACGTAAGCACCTTGGCCTTTGGTAATTCTCACCATGGGAACTTCATACAGGATAGCTTTGATATCCCACCCTCCACTTTAATTCATCATGGTTTTCCTTCAAGCCAAACAAATGGACAAAACCAAAATTCGTCAGTCATTGGAAAGACTATCTTTTCCTTTTCGGATTCAACTCAACCCGAAAATCCACAAAGTATGGCCCAAAACTCGCTTCTCGATCCTGTGGAGGTCAAAACTCAGAGAATCCCAGATGCAAGCTATCAAACTGACCTCTTATCTGAGGACTTTGGCCAGGATGAACTTCTTGGCGTCTTTCTCAAACAACAGCAACAAGGAGACAACGGATCGGTCGGATTAGATGACAGAGATTTCAATGCAAGTCTAAAGCAATCTTCCTCAGAATGCTCACACAGAAGATGCAAATCTTACTCCAACTTCGATTGGCGTTCAAAGCCTGAAGCGATTTATTTTAGGATGCGTGTGAAACTGTTTGTTTGTAACGGGCACATCGCTGGATTGTCGATGCAAGGCTCGGCTCGGCTCCATTGTATTTGGAACCAGTTAGGAGATTTCTCATCTCTCTAA 2199 44.34 MDLSHMKGSMPMPMPTPTSISARKSTDMVSDQFPAGLRVLVVDDDPTCLRILEKMLQNCCYAVTKCNRAEIALSMLRENKNGYDIVLSDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDGKNVVMKGVIHGACDYLIKPVRIEALRNIWQHVVRKRKTEWKDLEQSGSVDDGDREQNLSEGANYSSSAYEGSWNSSKRRRDAEEEPEERDDTSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSPHQSNLNNSFINPQDPPYGSMASFNGIDLQTLSVTGQLSPQSLAALQATGLHRPTAKSSISMALVDQNNIFSFENPKLRFVEDQTQHLNNSKPVNLFHGIPTKMEPKQLANMQHPSVQSQGNINMQLNIKSEHGGTQLMHLSQHQTVGQTLSNSPASHLRKPIVSGNVTRGNGTADNSHRSGYNLVSPTSVMVNYPMSQTTELSNNFSLQSNSSVSTLTCKGVFQEEISSDLKVSGGLMLSYDVFSDLHLQKSHDWDSQNVSTLAFGNSHHGNFIQDSFDIPPSTLIHHGFPSSQTNGQNQNSSVIGKTIFSFSDSTQPENPQSMAQNSLLDPVEVKTQRIPDASYQTDLLSEDFGQDELLGVFLKQQQQGDNGSVGLDDRDFNASLKQSSSECSHRRCKSYSNFDWRSKPEAIYFRMRVKLFVCNGHIAGLSMQGSARLHCIWNQLGDFSSL 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6887947 6892180 - CaPI482276_06g004760.1 Cam06g0476 128776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0476 732 FunFam Two-component response regulator 37 174 - -
Cam06g0476 732 Gene3D - 214 276 - -
Cam06g0476 732 ProSiteProfiles Response regulatory domain profile. 38 153 IPR001789 GO:0000160(InterPro)
Cam06g0476 732 MobiDBLite consensus disorder prediction 178 193 - -
Cam06g0476 732 MobiDBLite consensus disorder prediction 194 214 - -
Cam06g0476 732 NCBIfam myb-like DNA-binding domain, SHAQKYF class 217 270 IPR006447 GO:0003677(InterPro)
Cam06g0476 732 FunFam Two-component response regulator 213 276 - -
Cam06g0476 732 SUPERFAMILY CheY-like 36 160 IPR011006 -
Cam06g0476 732 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 216 273 IPR017930 -
Cam06g0476 732 PANTHER TWO-COMPONENT RESPONSE REGULATOR 34 291 IPR045279 GO:0009736(InterPro)
Cam06g0476 732 SUPERFAMILY Homeodomain-like 214 274 IPR009057 -
Cam06g0476 732 MobiDBLite consensus disorder prediction 160 177 - -
Cam06g0476 732 MobiDBLite consensus disorder prediction 446 462 - -
Cam06g0476 732 Pfam Myb-like DNA-binding domain 219 269 IPR001005 -
Cam06g0476 732 MobiDBLite consensus disorder prediction 160 214 - -
Cam06g0476 732 SMART REC_2 37 149 IPR001789 GO:0000160(InterPro)
Cam06g0476 732 MobiDBLite consensus disorder prediction 429 462 - -
Cam06g0476 732 CDD REC_typeB_ARR-like 39 153 - -
Cam06g0476 732 PIRSF RR_ARR_type-B 19 678 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Cam06g0476 732 Gene3D - 37 171 - -
Cam06g0476 732 Pfam Response regulator receiver domain 39 147 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0579 Cam-Chr4:19485636 Cam06g0476 Cam-Chr6:6887947 3.50E-21 dispersed
Cam05g0934 Cam-Chr5:8446087 Cam06g0476 Cam-Chr6:6887947 6.40E-37 dispersed
Cam06g0156 Cam-Chr6:3454490 Cam06g0476 Cam-Chr6:6887947 2.50E-41 dispersed
Cam06g0218 Cam-Chr6:3976256 Cam06g0476 Cam-Chr6:6887947 8.90E-27 dispersed
Cam06g0476 Cam-Chr6:6887947 Cam06g1357 Cam-Chr6:24953391 1.50E-81 dispersed
Cam09g0543 Cam-Chr9:5454036 Cam06g0476 Cam-Chr6:6887947 3.00E-26 transposed
Cam05g0746 Cam-Chr5:6486038 Cam06g0476 Cam-Chr6:6887947 1.60E-215 wgd
Cam06g0476 Cam-Chr6:6887947 Cam09g0542 Cam-Chr9:5449780 1.90E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52106 PF00072 Response_reg 7.00E-22 CL0304 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0476 K14491 - csv:101210138 1201.04