Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0488 ATGGTTGATTGCTACTGTTGGCTACCTATGCCTGCCCACTTCTTGCTCGACCATCTCCCTACGCTCTTTCGAATTCCTATTTTCATCCCATTAGAATCCAACAGAAAATGTTCGAAGAATCAGCTGGAGGAAAAAAAAATACTCTTCAATTGTGGCCGAATTCGATCAAACCAAGCCGCTGTGGCGTTGGACAGATTAGGAATGGGATCGGAGCAGTTGATGGCCGGAGGCGGGCCTCGATACGTTCAAATGCAATCGGAGCCGCCTTCGGCTTCGATGTCGTCGTTTTTTTCATTTCATCACGACGCTCCTGAGCCGACAAGGATTTTTGATGAGTTGCCGCAGGCCACAATCATTTCCGTCTCTCGACCTGATGCCGGCGATATCAGTCCCATGCTTCTTTCTTACACAATCGAGTGCCAGTACAAGCAGTTTAAATGGCGCATGCTGAAGAAAGCTTCCCATGTATTTTATTTGCATTTCGCATTAAAGAAACGGGCATTCATTGAGGAAATTCACGAGAAGCAAGAACAGGTTAAAGAATGGCTTCAAAATCTAGGAATAGGAGATCAAACAACAGTGCCCCAAGATGAGGATGGACCCGATGATGAGACCGATCCTCTGCATCATGATGAAAGTTCTAAAAATAGGGATGTTCCATCCAGTGCAGCCCTGCCAATTATTCGGCCTGCCTTAGGAAGGCAGCACTCTATGTCTGATAGAGCTAAGAATGCAATGCAAGGGTATCTGAATCACTTTTTGAGTAATATGGATATTGTCAACTCTCGAGAGGTTTGCAGGTTTTTGGAGGTCTCTAAGTTATCATTTTCACCAGAATACGGCCCAAAATTGAAAGAGGATTATGTCATGGTGAAGCACCTACCTAAAATTCCAAAGGAAGATGACTCTAGGAAATGTTGTCTATGCCCTTGGTTTGGTTGTTGTAATGACAATTGGCAAAAGGTGTGGGCTGTATTAAAACCTGGGTTTTTGGCCTTGTTGGGAGATCCTTTTGATACTCAACCAATGGATATTATAGTTTTTGATGTGCTACCTACTTCGGATGGCAATGGAGATGGACGAGTATCCCTGGCTAAGGAAATTAAAGAGCGAAATCCATTACGACATTCATTTAAGGTGACATGTGGAAATAGGAATATTAGGATTAGAGCAAAGAATGGATCCAAGGTTAAAGATTGGGTTGCTGCAATTAATGATGCTGGACTGAGGCCTCCTGAGGGCTGGTGTCATCCTCACCGTTTTGGCTCTTATGCTCCACCAAGAGGTTTGACTGAAGATGGTAGTAAGGCTCAGTGGTTCATTGATGGCCTAGCAGCTTTTGAAGCTATTGCCTTTTCCATTGAACGTGCAAAATCAGAGATTTTCATTTGTGGTTGGTGGCTTTGCCCAGAATTGTATCTGAGGCGTCCTTTTGTTTCAAATGCTTCATCTAGGCTTGATGCTTTACTTGAAGCAAAAGCTAAGGAAGGGGTTCAGATATACATTCTTCTCTACAAAGAGGTTGCCCTTGCTTTAAAAATTAACAGTGTTTATAGCAAGAGAAAACTTCTTGGCATCCATGAGAACGTGAGAGTATTGCGCTACCCTGACCACTTCTCCAGCGGTGTGTACTTATGGTCCCACCATGAAAAACTTGTCATTGTTGATTATCATATTTGCTTTATTGGAGGACTGGATTTATGCTTTGGTCGTTATGATACACCCGAACATAAAGTTGGTGATTGTCCTCCTTCAGTATGGCCTGGGAAGGACTACTATAATCCAAGGGAATCTGAGCCAAATTCATGGGAAGATACCATGAGAGATGAGTTGGATCGCAAGAAATATCCTCGCATGCCTTGGCATGATGTCCACTGTGCACTCTGGGGACCATCTTGTAGAGACATAGCCAGGCATTTTGTCCAACGCTGGAATTATGCTAAGAGAAATAAAGCCCCAAACGAGCAGGCAATTCCATTACTTATGCCTCAGCATCATATGGTCATTCCTCATTACTTGTGGAATAGCCGAGAGTTGGAGGTTGAAAAGAAGAGTTTTGACAATTCTAGAGGAACAACAGTGCAGGATTCGTTTTCTCGAGGATCATCTTTCCACGATATTCCATTGCTTTTGCCTCAAGAGGCTGATGGACAGGATGCTGAAAAATTAAATGGACTGGAGCCCATTGTCAATCCCCTTGATCAGCCAAGTAAGGTCAGCAGCGGTCTCTCTTTTTCTTTCAGGAAGATCAAAGTTGAACCCGTAGGACCCGATATGCCTCTAAAAGGCTTTGTTGATGATCTTGACCATTTGGATTCCCATGGAAAGTTGTCTGGAGATGGGAAAACACATCATCATGTCAAAAGTTCGGATTTTGAGTGGTGGGAAACGCAAGACAGAGGACATCATGGTGGCTTCACAGATGAATCTGGACAAGTTGGTCCATGTGCTTCATGTCGTTGCCAGGTCATCAGAAGCGTCAGTCAGTGGTCTGCTGGGACAAGCCGAACTGAAGAAAGCATTCACACTGCATACTGCTCTCTTATTGAGAAAGCAGAACATTTTATCTACATCGAGAATCAATTTTTTATATCAGGCCTCTCGGGAGACGATTCAATACGGAACCGTGTATTAGAAGCATTATACCGCCGCATAATGAGAGCCTACCGTGAAAAGAAGATTTTTAGGGTCATTATTGTCATACCACTCTTACCTGGATTTCAGGGGGGTCTGGACGATAGTGGTGCAGCATCGGTTAGAGCTATAATGCATTGGCAGTATCGAACTATATGTCGAGGACAGAATTCAATATTGCATAATCTTTATGATCTCCTTGGTTCAAAAGTTCATGATTATATATCATTTTACGGCCTCAGAGCTTATGGTAAACTCTTTGATGGTGGTCCTGTGGCTACAAGCCAGGTGTACGTGCATAGTAAAATTATGATTATTGATGATTGTATTGCTTTGATTGGATCGGCTAATATCAACGACAGAAGTTTACTTGGTAATAGGGATTCCGAGATTGCTATTGTTATTGAAGATAACGAACTCATCAATTCATATATGGGAGGACAACCATGGAAAGCAGGAAAATTTTGCTGGAGTCTACGTCTCTCTCTTTGGTCTGAACATCTCGGTCTTCGTCCCGGACAGATCAATCAAATAGTTGACCCAGTTGCTGATTCAACCTACAAGGATACGTGGATGGCAACTGCCAAGACAAACACAACAATATACCAAGATGTTTTTTCTTGCTTACCAAACGACCTCATAAATTCAAGAGCTGGACTGAGACAGAGCGTTACGATCTGGAAAGAGCGACTGGGACACACGACAATAGATTTAGGAATTGCCCCTGAGAAGCTTGAGTTTTATAAGAATGGAGAAATAGAAAGGATTGATCCAATGGAGAGATTAAGCTCAGTGAAGGGGCATCTTGTTTCCTTCCCACTGGAATTCCTCAGCAAAGAAGATTTAAGACCTGTGTTCAATGAGAGTGAGTATTATGCATCTCAAGTTTTTCATTAA 3531 42.91 MVDCYCWLPMPAHFLLDHLPTLFRIPIFIPLESNRKCSKNQLEEKKILFNCGRIRSNQAAVALDRLGMGSEQLMAGGGPRYVQMQSEPPSASMSSFFSFHHDAPEPTRIFDELPQATIISVSRPDAGDISPMLLSYTIECQYKQFKWRMLKKASHVFYLHFALKKRAFIEEIHEKQEQVKEWLQNLGIGDQTTVPQDEDGPDDETDPLHHDESSKNRDVPSSAALPIIRPALGRQHSMSDRAKNAMQGYLNHFLSNMDIVNSREVCRFLEVSKLSFSPEYGPKLKEDYVMVKHLPKIPKEDDSRKCCLCPWFGCCNDNWQKVWAVLKPGFLALLGDPFDTQPMDIIVFDVLPTSDGNGDGRVSLAKEIKERNPLRHSFKVTCGNRNIRIRAKNGSKVKDWVAAINDAGLRPPEGWCHPHRFGSYAPPRGLTEDGSKAQWFIDGLAAFEAIAFSIERAKSEIFICGWWLCPELYLRRPFVSNASSRLDALLEAKAKEGVQIYILLYKEVALALKINSVYSKRKLLGIHENVRVLRYPDHFSSGVYLWSHHEKLVIVDYHICFIGGLDLCFGRYDTPEHKVGDCPPSVWPGKDYYNPRESEPNSWEDTMRDELDRKKYPRMPWHDVHCALWGPSCRDIARHFVQRWNYAKRNKAPNEQAIPLLMPQHHMVIPHYLWNSRELEVEKKSFDNSRGTTVQDSFSRGSSFHDIPLLLPQEADGQDAEKLNGLEPIVNPLDQPSKVSSGLSFSFRKIKVEPVGPDMPLKGFVDDLDHLDSHGKLSGDGKTHHHVKSSDFEWWETQDRGHHGGFTDESGQVGPCASCRCQVIRSVSQWSAGTSRTEESIHTAYCSLIEKAEHFIYIENQFFISGLSGDDSIRNRVLEALYRRIMRAYREKKIFRVIIVIPLLPGFQGGLDDSGAASVRAIMHWQYRTICRGQNSILHNLYDLLGSKVHDYISFYGLRAYGKLFDGGPVATSQVYVHSKIMIIDDCIALIGSANINDRSLLGNRDSEIAIVIEDNELINSYMGGQPWKAGKFCWSLRLSLWSEHLGLRPGQINQIVDPVADSTYKDTWMATAKTNTTIYQDVFSCLPNDLINSRAGLRQSVTIWKERLGHTTIDLGIAPEKLEFYKNGEIERIDPMERLSSVKGHLVSFPLEFLSKEDLRPVFNESEYYASQVFH 1176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6999880 7010565 - CaPI482276_06g004880.1 Cam06g0488 128788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0488 1176 Gene3D Endonuclease Chain A 804 1030 - -
Cam06g0488 1176 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 544 571 IPR001736 GO:0003824(InterPro)
Cam06g0488 1176 FunFam Phospholipase 807 1027 - -
Cam06g0488 1176 ProSiteProfiles PH domain profile. 318 409 IPR001849 -
Cam06g0488 1176 Gene3D Endonuclease Chain A 432 670 - -
Cam06g0488 1176 PANTHER PHOSPHOLIPASE D 246 1157 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Cam06g0488 1176 SMART PH_update 283 411 IPR001849 -
Cam06g0488 1176 SUPERFAMILY Phospholipase D/nuclease 389 663 - -
Cam06g0488 1176 CDD PLDc_vPLD1_2_yPLD_like_1 437 582 - -
Cam06g0488 1176 Gene3D - 310 407 IPR011993 -
Cam06g0488 1176 MobiDBLite consensus disorder prediction 189 220 - -
Cam06g0488 1176 SUPERFAMILY Phospholipase D/nuclease 813 1022 - -
Cam06g0488 1176 Coils Coil 165 185 - -
Cam06g0488 1176 SMART pld_4 973 1000 IPR001736 GO:0003824(InterPro)
Cam06g0488 1176 SMART pld_4 544 571 IPR001736 GO:0003824(InterPro)
Cam06g0488 1176 Pfam PLD-like domain 974 1022 IPR025202 -
Cam06g0488 1176 CDD PLDc_vPLD1_2_yPLD_like_2 833 1017 - -
Cam06g0488 1176 Pfam Phospholipase D Active site motif 544 571 IPR001736 GO:0003824(InterPro)
Cam06g0488 1176 PIRSF PLD_euk 744 1176 IPR016555 GO:0004630(InterPro)|GO:0006654(InterPro)|GO:0035556(InterPro)
Cam06g0488 1176 PIRSF PLD_euk 100 695 IPR016555 GO:0004630(InterPro)|GO:0006654(InterPro)|GO:0035556(InterPro)
Cam06g0488 1176 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 973 1000 IPR001736 GO:0003824(InterPro)
Cam06g0488 1176 CDD PH_PLD 260 407 - -
Cam06g0488 1176 SUPERFAMILY PH domain-like 315 407 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0488 Cam-Chr6:6999880 Cam08g1871 Cam-Chr8:24724885 3.80E-39 dispersed
Cam02g1583 Cam-Chr2:28746016 Cam06g0488 Cam-Chr6:6999880 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0488 K01115 - csv:101211856 2187.15