Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0495 ATGTCAAACGGATTTGCCAATGGCGAAGGTGATAAAAAGAAGAAGAAAATCGCCATCGTTAGTGTCTCTTCTTTAATCCTGGTGGCAATGGTTGTCGCCGTCACCGTCGGCGTCAACAGTGCACCTCACGAAGAGCACAGCGACGATCACGGTGGCGAGACTCATGAGATTTCATCAACGACTAAAGCAATCCAAGCCATTTGTCAACCTACGGATTACAAAGAATCCTGCGAGAAGAGTCTAATGGCAGAAGCCGGTAATACAACAGACCCAAAAGAGCTAGTGAAAGTGGGATTCAAAATCGCCACGAGGAATCTAAACGAGGCGATAAGAAATTCCACCACGCTTCAAGAATTAGCCAAAGACCCAAGAACCAACCAAGCCCTTCAAAATTGTCGTGAGCTTTTAGAATATGCGATTGATGATTTGAACGAATCGTTCGAAAGAATCGGGACCTTCCAAATGTCCAAACTGGATGAGTTCGTTGGGGATTTAAAGATTTGGCTGAGTGGGGCCATGACGTACGAACAAACTTGTTTGGATGGATTTGAAAACACGACAGGCAATGCTGGGGAGAGAATGAAAGAGTTTCTGAAGTCAGCTCAAGAAATGACAAGCAACGGTCTTGCAATAGTGAATGAATTGTCTGGCATTTTGGGGACACTCCAAATCCCTGGAATGAGTGGACGACGACTTTTGGAAGACGAAATGCCATCATGGGTGAGCGAGGGAAAGAGGCGACTGATGCAGGCAGGTGCAGCATCCATGAAGCCCGATTTGGTGGTGGCTCAAGATGGGAGTGGGAAGTACAAGACTATAAATGAAGCTTTGGTTGATGTGCCTTTGAAGAGTAACAAAACGTTTGTGATCTATGTGAAGGCTGGAATCTACAAGGAAATTGTTGTTATTCCAAAGGCTATGACTCATCTGACCATGTACGGTGACGGTCCAACCAAAACGGTGGTTACTGGTAGCTTAAACTTTATTGACGGTATTCAAACATTCAAGACGGCTACCTTCTCTGCAATTGGAGCTAATTTCTACGCTAGAGATATGGGATTCGAGAACACCGCTGGGGCTGCAAAGCACCAAGCCGTAGCCCTACGAGTCCAATCCGATAGATCAATCTTCTACAACTGTCAAATAGATGGCTACCAAGATACCCTCTACGCACACGCTCACCGTCAGTTCTACAGAGACTGCACAATCAGTGGCACCATCGACTTCGTGTTCGGTAACGCCGCCACCATTTTCCAGAACTGCAAGCTGGTGGTCCGAAAGCCAATGGATAACCAACAATGCATCGTCACAGCTCACGGCCGTCTCAACCGCCGTGAACCCACAGCATTGATCTTCCAAAGCTGCCATTTCATGGGTGACCCTGCTTACTTGCCCTTCAAGAACATCAACAAGGCATACTTGGGGCGTCCTTGGAAGGAATATTCACGAACCATTATAATCGGGTCTCAAATAGACGATATCATCCAGCCTGAAGGATGGTTGCCATGGATGGGCGATTTTGGGCTCAAAACCTTGTTCTACGCCGAGGTACAGAACAAAGGGCCAGGGGCTGATGAAAGCAAGAGAGTGAAGTGGCGAGGAATTAAACATATTACGCCACAACACGCCGCGGATTTCACTCCTAGACGATTTATTGATGGCGATGCTTGGATTCCTGCTAAGGGAATTCCCTACTCTTCTGGAATGATGTGA 1713 46.94 MSNGFANGEGDKKKKKIAIVSVSSLILVAMVVAVTVGVNSAPHEEHSDDHGGETHEISSTTKAIQAICQPTDYKESCEKSLMAEAGNTTDPKELVKVGFKIATRNLNEAIRNSTTLQELAKDPRTNQALQNCRELLEYAIDDLNESFERIGTFQMSKLDEFVGDLKIWLSGAMTYEQTCLDGFENTTGNAGERMKEFLKSAQEMTSNGLAIVNELSGILGTLQIPGMSGRRLLEDEMPSWVSEGKRRLMQAGAASMKPDLVVAQDGSGKYKTINEALVDVPLKSNKTFVIYVKAGIYKEIVVIPKAMTHLTMYGDGPTKTVVTGSLNFIDGIQTFKTATFSAIGANFYARDMGFENTAGAAKHQAVALRVQSDRSIFYNCQIDGYQDTLYAHAHRQFYRDCTISGTIDFVFGNAATIFQNCKLVVRKPMDNQQCIVTAHGRLNRREPTALIFQSCHFMGDPAYLPFKNINKAYLGRPWKEYSRTIIIGSQIDDIIQPEGWLPWMGDFGLKTLFYAEVQNKGPGADESKRVKWRGIKHITPQHAADFTPRRFIDGDAWIPAKGIPYSSGMM 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7060431 7062143 + CaPI482276_06g004950.1 Cam06g0495 128795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0495 570 FunFam Pectinesterase 253 569 - -
Cam06g0495 570 SMART PMEI_2 59 211 IPR006501 GO:0004857(InterPro)
Cam06g0495 570 MobiDBLite consensus disorder prediction 41 61 - -
Cam06g0495 570 FunFam Pectinesterase 60 216 - -
Cam06g0495 570 Pfam Plant invertase/pectin methylesterase inhibitor 62 211 IPR006501 GO:0004857(InterPro)
Cam06g0495 570 Gene3D - 253 569 IPR012334 -
Cam06g0495 570 MobiDBLite consensus disorder prediction 42 56 - -
Cam06g0495 570 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Cam06g0495 570 Gene3D Invertase/pectin methylesterase inhibitor family protein 58 216 IPR035513 -
Cam06g0495 570 CDD PMEI-like_3 66 217 - -
Cam06g0495 570 SUPERFAMILY Pectin lyase-like 256 568 IPR011050 -
Cam06g0495 570 Pfam Pectinesterase 259 555 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cam06g0495 570 NCBIfam pectinesterase inhibitor domain 59 215 IPR006501 GO:0004857(InterPro)
Cam06g0495 570 PANTHER PECTINESTERASE 15 560 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cam06g0495 570 ProSitePatterns Pectinesterase signature 1. 284 303 IPR018040 -
Cam06g0495 570 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 62 216 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0495 Cam-Chr6:7060431 Cam07g1131 Cam-Chr7:25788586 8.70E-114 dispersed
Cam11g0016 Cam-Chr11:1730878 Cam06g0495 Cam-Chr6:7060431 2.60E-137 transposed
Cam05g0734 Cam-Chr5:6389342 Cam06g0495 Cam-Chr6:7060431 5.80E-203 wgd
Cam06g0495 Cam-Chr6:7060431 Cam09g0553 Cam-Chr9:5515843 5.10E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0495 K01051 - csv:101221958 1033.48