Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0510 ATGGAGGAAGCCATTTCTCGAATCCTCACGGAGCTCGAAGAAGTTCGCCATTTCGACGACTCTACAACTCTCCATTCCCAACCTCCGCCGCCGCTCTCCGATTCCTCTCTCTTCGACCTTCAAAGCTTATTAGACAACTCAATCGGTACCGATGAACAACCACCACTCGATCGCCTCTACGACGACCTCTCGGCCAAATCCCTCTCTCCGTCTTCTCTTACCCGAGCCATCGCCTCCGCCATGGACGAGTCTTCCACTCGCGTTTCGATTTTAGCTTCTAGAGTCTATCTCTCCCTTCTTCTGGCCCCAAATGCACCGGTGTTCACGCTGTTCAATCCGATGGATTTTCTTTCGTTTCTCAGGTCGATGAGGCGATTATTGAAGCAGAGGCCGCGGGCTCAACCGGACCAGGATGATTCTAATAAGGAGTCTAATGCTCCCAAACGGAAGAGGAAAGCCGGTGTTAAGGGTAAGGGTTTGGGGAATTGTGCGCTGAGGCAGAGTTTTAGTGGCAGGTATGATGATGGTGAATTCGATGCAAGAGTCTTGTATCCTGTACTTGAGAGGTTAGAGAATTTAATGAGTTTGATTCATTTGGATCGATTTCCGGATAGTTTAAAATCTTTGATTGAAACTGTAATTGATATTCCAGTTTTGGCACTTGAAGTATGCACTAATTTAAGTATCTATAGTAAGTTCACTAATTTATGTTCACGGATTTTGAGTGCTACATTGCGTCCTGAGCATGGGGATCTATCGAGTACTGCCGTTGAGGTGATTAAGTCTCTGTCACCATTGATTATTAATCATAAGGATCAGGCGCGGGCGTTTGCGCTAGGGTTTGTGACTATTCAAATAGCAAATGTAGCAAAGGAATCAGATGGTGTTAAGAGTGCACTGGTGAATCTTCCAAGGTATTTGGTTCAGAAGGCTCCTGAGAAATCTGAGCCTCGTAGTTTAGCAGTTGATTCAATAATGGAGATTGTTAAAGTGATGGAATTCCCCGATCAAATTGGGTTTGTGGATTATGTAGTGAAGATGACCAGAGGAAAGTCTAATCTTAGGCTGTTAGCGGTTGATCTCATCTCAATGCTGATAACGTCCTTGAGTGGTCCAATGGCCATTGATTCCGAAAGCGAACTAAAGGATTCGTGGGGATTTGGGTGCTTGGTGGCATTGGTTCAACGTTGTTCAGATGCCAGTGCTCCAATTCGTGCTCGAGCACTTACCAACTTAGCTCACCTTGTGGTGTTCTTGTCTGAGAATGACAAGAATAAGGCCTTACTGGAGGAACTGTTGGGGTCTGGTGACAGACATTGCAAAAAAAGTGGAGGTGAAATTCATGCTCTTTTGCGAAAAAGGTGTATGGATGAGAAGGCGGCAGTTAGGAAGGCTGCATTATTTCTGGTTACCAAGTGCACAACCCTCCTTGGTGGAGCAATGGATGGAGATATGCTGAAAACGGTGGGAATTGCTTGTTCTGACCCACTTGTTAGCATACGGAAAGCTGCAATGTCGGCTCTCTCAGAGGCCTTTCGAAGATTCCCAGATGAAAGTGTCATGGTCGAGTGGCTACACTCTATTCCACGTTTAATTGCTGACAGTGAATCTAGCATTCAAGAAGAGTGTGAACACTTGTTTCAAGAACTAGTACTAGACCGGTTGTCTAGAGTTGGATCTTCAAGTTTACCTAAAGGAGCATTGAATCTTCTTAAAGAGATGAGTCATGCAGAGGTAATTCCTTGGGTGAGGAAAGTTTGTGCTAATTTGGGAAAAAAGAAAAAATTAAAACGCACAATTGCGGATTCACTTCAGATAATTATAAAGACATCTGAATCCTTTTGGCTAAGCCAATCTTTGCCTCCAGAGAGGTGGACAGCTCCCCCAGGTGCCTGGTTCCTGCTGGCAGAAGTATCGACTTATCTTGGGAAAGCCGTTGATTGGGAGTTTCTTCATCATCACTGGAAACTCCTTGATGATCATGGTAGGACTGAGTTTCAGAGTCCAGTGGCTCAAGTAGGTTTATTTGGAGAGGAAAACAACTCAGAGTCAAATTCCGTCACTTGGGCTCAAGATCGAGTTTTTCTCTTACAAACCATTTCTAATGTTTCTGTTGAGCTGCCTCCAGAACCTGCAGCAGAATTAGCTCATGAATTGCTTAAAAGGGTTGAAGAATTTAACATGCATTCAACGGAGGTGAATGCACATGTAAAAACACTTAAAACATTGTGTAAGCGGAAGGCTTTGCAATCTACAGAAGCCGATGCCCTTATCCTAAAATGGGTGAACCAGCTGCTTTCCAAAGCCTCTCACATATTGGAGAAGTACATATCCAAGCATGCAGAAGCAAACAAAGATGTGAACTTCGTAACTCCACCTCCTAAAAGTGGTAGTCGAATTGGGAAGAAAACAACTGCCAGGAGCAAGTCCTTGTCCCGAGCAATCACTGCAGCTTACACCATTGGCTCTTTGATTCTCATTTGTCCATCGGCTGACATGACTACCATCATACCACTTCTCCACACCATTATCACTTCTGGAAACCGTGATCCCAAATCTAATAAACTACCAATTCAAACTGCATCTCTAAAGGAAACTGCCCCTTCTTTATACGTTCAAGCATGGTTGACAATGGGGAAGATTTGCCTTGCTGACGAGAAGCGTGCAAAGAGTTACATTCCTCTATTTGTACAGGAGCTTGGAAACAGTGATTGTGCAGCTCTTCGCAACAACCTTATTATCACAATGGCAGATTTTTGTGTACGCTATACTGCTCTAGTTGACTGCTACCTTACGAAAATCACAAAGTGCCTTCGGGACCCTTGTGAACTTGTCAGAAGACATACATTCATACTTCTATCGAGATTACTACAGAGGGACTATGTGAAATGGAGAGGGGTTTTGTTTCTTCGGTTTCTCTTGTCACTTGTTGATGAATCAGAGAAGATTCGTCAACTAGCAGATTTCCTTTTTGGGAACATTTTAAAAGTGAAGGCACCACTTTTGGCTTACAACAGTTTTGTAGAAGCAATTTATGTTTTGAATGACTGTCGTGCTCATTCTGGACATAGCGATTCAAATGCTTCACGAGCTGAAAGTCGACTATTCTCCATCCGAGGCAATGATGAAAGGTCGAGGTTCAAGAGAATGCACATTTATGTTTCTCTGTTGAAACAAATGGCTCCTGAGCATCTTTTGGCAACCTTTGCAAAGTTATGCGCAGAGATTCTTGTTGCAGCATCAGATGGTATGCTCAATATAGATGATACCACTGCACGGTCTGTTTTACAGGATACCTTTGATATTCTTGCTTGTAAAGAGCTCCGACTATCGGTAAATCGAGTATCATCATCAGAATCTGGTGATGTAGATGAGGAAGGAGGCGAGAGCGGAGGAGCATCTGCTGCTAGAGGAAAGGTCATCACTCATGCAGTGAGAAAGAGTCTCATTCAAAGCACCATACCCATCTTCATTGAGTTAAAAAGGCTAATGGAAAGCAAGAATAGCCCCCTTATAGGTTCCCTCATGGAATGTCTTCGAGTTCTTCTCAAAGACTACAAGAACGAAATCGATGACTTATTGGTAGCCGATAAGCAACTTCAGAAAGAGCTCCTCTATGACATTCAAAAGTATGAATCTACCAAAGCCAAGTCAGCTGCTGCCGAGGCGGTCAACGAGATGCATAAGTCAACTAACTATCTTTCGCCTGAGGCTCCTCCTCAAGCTAGAAGTGCCATTAACAAGCTAACCTCAAAGATTCAAAATGACTTGAAAGTTGCTTCAGCCATTGCTGATGCAGCTGCTGCAGCCACAGCAAAATCTGTGCTTAGGGAAGTGAATAGAGGGGCTTCGACACCGCCTCTTGGTTCTCTAAGTTTGCCTAAACTCAAGTCTCGTACTGGTGGAAACAATGACACAAATACCTCACATTTTAATAGACGACGGCGGCTTACGGGTAGAAGTTCAACTATTGTTTCTGCATCTGGTTCATCTGAAAGGATGTCAACATCTGCAATTATGGAAAGAATTCCAAGCAAGTGGCAATGTCCGGTTTGGCAAGCTCCATGGAGAAATTATAGGGATTTGGAGTTGGCTCCAGTCTTGAATTCAGTGAATTATAAGGAGGAAGTAAGATTTACTGTAGGTCTTGCTGTCAGCAACAGGCATACCTACATGTTTTCAGCTGGTGATGACAAACAAGTTAAATGCTGGGACATGGAACAGAATAAGGTAATTTGTCATTACCATGGTCATCTGAGTGGTGTTTACTATTTGGCTCTTCATCCAACAATCGATGTTTTGCTTGCTGGGGACGTGATTCTGTCTGCTGGTTTTCAGCAGAAGACTATAATCAATGCAATAACTGTCAATGAGGAGGGTGTTATGGTGACTGGAGGATCATCATTGGAATCTGGTGATGTAGACAAGGAAGGAGGCGAGAATGGAGGAGCATTTGCTGCTAGAGAAAAGATCACCACTCATGAAGTGAGAAAGAGTCTCATTCAAAACAACATATCCATCTTCATTGAGTTAAAAAGGCTTATGGAAAGCAAGAATTGCCCCCTCATAGCTGCTGCAGCCACGGCGAAGTTTGTGCTTAGGAAAGTGAACAGAGGGGCTACGACACCGCCTCTCAATTCTCTAAGTTTGCCAAAACTCAAGTCTCATACTGGTGGAAACAATGGCACAACAGCCCGACTCCCAGCTCGGTGTTCATCGGTAAGAAATCTTTTGTACGAATTCGATCTTCAGAATGAATCAAGATCCTCATCTTTCTTCATGTTTCAAGCCATCAATCTCTTTATATCAGGTTTTTTGGAAGATTGTGTCGGTGCGATTATGGATGGGAATAAGGACGAAGCTTTAAGATGTATTCGCATGGCGGAAGAAGCAATTGCATCGGGGAATAAAGAGCGAGCACTTAGATTCATTAAAATTGCTCGTCGCCTTAATCAGAGTTTGCAAGTGGATGAGCTATTGACGGCGTGCGAAGAGATCGGTTCGGGATCGCCTTCATCTTCTTCCGATGAGAAACGCGCGGGAAAAGTTGAGAGTGTTTCTGGTTCAGTGAAACATGTTGATGGTTTGAATGGTGAACGTAATTACACTATAGAACACGTTCAGTTGATTAGGCAGATAAAAACAACCAAGGACTATTACCGAATTCTTGGTGTGGAGAAAACTAGTTCGGCTGAAGAGATTAAGAAAGCTTATAAGAAATTGTCCTTGAAAGTTCACCCTGATAAAAACAAGGCTCCTGGTTCAGATGAAGCATTCAAGAAATTATCCAAGGCTTTCATGTGTTTGAGCGATGATACTTTGAGGAGGCAATATGATCACACGGGTTTGGTTGATCAGTATGAGTACAACCAACAGCATAATGTAAGGCATAGGAGAAGGAGAACGGGTCATGATTTGTTTGAAGAAAATTTCGATCCTGATGAGATACTCAGAGCGTTCTTTGGGCAGGGAAATATGTTTCAGACTAGTCGTGCTTATACTTATAGAACTGGAGGTGCGGGAAGCCAACAGAGGACAGAATCTGATGGGGGAGGTCCCAGCTTGTTGATTATTCTTCTAATGTTACCATTCTTGTTAATTTGCTTGTTGGCTTATATGCCATTTCCAGAGCCGGACTATGCTTTGCATAAAAACCTATCCTATAGTGTTCCTATGGCAACGGAGAAACATGGAGTGGAATTTTTTGTTAAATCATCTGATTTTGATGTAAGATATCCTCTTGGAAGCCCAGGTCGAGCTGAAATAGAGAATAGTGTGCTGAGGGATTATAGAAACATGGTTTGGCGTTATTGTCATGTAGAACTCCAGAGACGCCAGTGGAATAGAAATCTCCCAACTCCTCACTGCGAGAAGCTGAATAATCTCGGTGTAGCATAA 5898 43.32 MEEAISRILTELEEVRHFDDSTTLHSQPPPPLSDSSLFDLQSLLDNSIGTDEQPPLDRLYDDLSAKSLSPSSLTRAIASAMDESSTRVSILASRVYLSLLLAPNAPVFTLFNPMDFLSFLRSMRRLLKQRPRAQPDQDDSNKESNAPKRKRKAGVKGKGLGNCALRQSFSGRYDDGEFDARVLYPVLERLENLMSLIHLDRFPDSLKSLIETVIDIPVLALEVCTNLSIYSKFTNLCSRILSATLRPEHGDLSSTAVEVIKSLSPLIINHKDQARAFALGFVTIQIANVAKESDGVKSALVNLPRYLVQKAPEKSEPRSLAVDSIMEIVKVMEFPDQIGFVDYVVKMTRGKSNLRLLAVDLISMLITSLSGPMAIDSESELKDSWGFGCLVALVQRCSDASAPIRARALTNLAHLVVFLSENDKNKALLEELLGSGDRHCKKSGGEIHALLRKRCMDEKAAVRKAALFLVTKCTTLLGGAMDGDMLKTVGIACSDPLVSIRKAAMSALSEAFRRFPDESVMVEWLHSIPRLIADSESSIQEECEHLFQELVLDRLSRVGSSSLPKGALNLLKEMSHAEVIPWVRKVCANLGKKKKLKRTIADSLQIIIKTSESFWLSQSLPPERWTAPPGAWFLLAEVSTYLGKAVDWEFLHHHWKLLDDHGRTEFQSPVAQVGLFGEENNSESNSVTWAQDRVFLLQTISNVSVELPPEPAAELAHELLKRVEEFNMHSTEVNAHVKTLKTLCKRKALQSTEADALILKWVNQLLSKASHILEKYISKHAEANKDVNFVTPPPKSGSRIGKKTTARSKSLSRAITAAYTIGSLILICPSADMTTIIPLLHTIITSGNRDPKSNKLPIQTASLKETAPSLYVQAWLTMGKICLADEKRAKSYIPLFVQELGNSDCAALRNNLIITMADFCVRYTALVDCYLTKITKCLRDPCELVRRHTFILLSRLLQRDYVKWRGVLFLRFLLSLVDESEKIRQLADFLFGNILKVKAPLLAYNSFVEAIYVLNDCRAHSGHSDSNASRAESRLFSIRGNDERSRFKRMHIYVSLLKQMAPEHLLATFAKLCAEILVAASDGMLNIDDTTARSVLQDTFDILACKELRLSVNRVSSSESGDVDEEGGESGGASAARGKVITHAVRKSLIQSTIPIFIELKRLMESKNSPLIGSLMECLRVLLKDYKNEIDDLLVADKQLQKELLYDIQKYESTKAKSAAAEAVNEMHKSTNYLSPEAPPQARSAINKLTSKIQNDLKVASAIADAAAAATAKSVLREVNRGASTPPLGSLSLPKLKSRTGGNNDTNTSHFNRRRRLTGRSSTIVSASGSSERMSTSAIMERIPSKWQCPVWQAPWRNYRDLELAPVLNSVNYKEEVRFTVGLAVSNRHTYMFSAGDDKQVKCWDMEQNKVICHYHGHLSGVYYLALHPTIDVLLAGDVILSAGFQQKTIINAITVNEEGVMVTGGSSLESGDVDKEGGENGGAFAAREKITTHEVRKSLIQNNISIFIELKRLMESKNCPLIAAAATAKFVLRKVNRGATTPPLNSLSLPKLKSHTGGNNGTTARLPARCSSVRNLLYEFDLQNESRSSSFFMFQAINLFISGFLEDCVGAIMDGNKDEALRCIRMAEEAIASGNKERALRFIKIARRLNQSLQVDELLTACEEIGSGSPSSSSDEKRAGKVESVSGSVKHVDGLNGERNYTIEHVQLIRQIKTTKDYYRILGVEKTSSAEEIKKAYKKLSLKVHPDKNKAPGSDEAFKKLSKAFMCLSDDTLRRQYDHTGLVDQYEYNQQHNVRHRRRRTGHDLFEENFDPDEILRAFFGQGNMFQTSRAYTYRTGGAGSQQRTESDGGGPSLLIILLMLPFLLICLLAYMPFPEPDYALHKNLSYSVPMATEKHGVEFFVKSSDFDVRYPLGSPGRAEIENSVLRDYRNMVWRYCHVELQRRQWNRNLPTPHCEKLNNLGVA 1965
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7173927 7189145 + CaPI482276_06g005100.1 Cam06g0510 128810

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0510 1965 SMART dnaj_3 1717 1774 IPR001623 -
Cam06g0510 1965 PRINTS DnaJ domain signature 1754 1774 IPR001623 -
Cam06g0510 1965 PRINTS DnaJ domain signature 1738 1753 IPR001623 -
Cam06g0510 1965 PRINTS DnaJ domain signature 1720 1738 IPR001623 -
Cam06g0510 1965 SUPERFAMILY ARM repeat 336 1009 IPR016024 -
Cam06g0510 1965 MobiDBLite consensus disorder prediction 1281 1333 - -
Cam06g0510 1965 SUPERFAMILY Chaperone J-domain 1714 1794 IPR036869 -
Cam06g0510 1965 Coils Coil 1176 1203 - -
Cam06g0510 1965 Gene3D - 318 556 IPR011989 -
Cam06g0510 1965 MobiDBLite consensus disorder prediction 129 150 - -
Cam06g0510 1965 MobiDBLite consensus disorder prediction 128 158 - -
Cam06g0510 1965 MobiDBLite consensus disorder prediction 1318 1333 - -
Cam06g0510 1965 Pfam DnaJ domain 1718 1779 IPR001623 -
Cam06g0510 1965 Pfam Domain of unknown function (DUF1977) 1876 1946 IPR015399 -
Cam06g0510 1965 Pfam non-SMC mitotic condensation complex subunit 1 908 1076 IPR032682 -
Cam06g0510 1965 Gene3D - 1369 1451 IPR015943 GO:0005515(InterPro)
Cam06g0510 1965 Gene3D DnaJ domain 1715 1833 IPR036869 -
Cam06g0510 1965 SUPERFAMILY WD40 repeat-like 1382 1438 IPR036322 GO:0005515(InterPro)
Cam06g0510 1965 PANTHER CONDENSIN 1481 1524 IPR026971 GO:0000779(PANTHER)|GO:0000799(PANTHER)|GO:0007076(PANTHER)|GO:0007076(InterPro)|GO:0010032(PANTHER)|GO:0042393(PANTHER)
Cam06g0510 1965 ProSiteProfiles dnaJ domain profile. 1718 1782 IPR001623 -
Cam06g0510 1965 CDD DnaJ 1718 1771 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0510 K11491 - - csv:116405799 1996.09
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0510 Cam-Chr6:7173927 Cam06g1249 Cam-Chr6:23813704 9.40E-59 dispersed
Cam06g0507 Cam-Chr6:7149346 Cam06g0510 Cam-Chr6:7173927 6.40E-17 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g188 . . . . . . . Bma05g01033 . Cmo17g00319 . . . . . . . . . . . . . . Cla06g00476 Cam06g0510 Cec06g0511 Cco06g0514 Clacu06g0494 Cmu06g0496 Cre06g1267 . . Cone7ag0143 Cone4ag0147 . . Chy11g01513 . . . . . Bpe05g00834 . . . . . . . Cma17g00329 . Car17g00303 Cpe12g00279 . Bhi12g02049 . . . . . . . . . . . . . Lsi09g01433 . . Cme11g02015
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010431 2 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 2 1 2 1 1 31