Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0544 ATGTCTCTCAAGAGCATCTTCCAAGATATGAGGTCCCGCTCACGCTGTGTGGTGCAGGACGCCTCCGCTCCGGAGCCCAGGGACGCTCTGGACCAAAGCTGTTGGGCCAATATGCCTCAGGAGCTTCTCCGGGAGGTTTTGATCAGAATCGAGGCGTCCGAGACCTTTTGGCCGCCTAGGAAGAGTGTCGTCGCTTGCGCCGGAGTGTGCCGGAGCTGGCGAGCCATTACTAAGGAGATCGTTAGAACGCCGGAGGTTTCCGGTAGGTTGACGTTCCCGATCTCTATCAAGCAGCCTGGTCCAAGGGATCCTCTTCTACAGTGTTTCATAAAGCGAAACAGATCCAATCAAACTTATTATCTCTTCCTCAGTTTGACCAGTGCACTAAGTGATGACGGTAAATTTCTACTTGCTGCACGCAAATGCAAGCGCCCGACCTACACAGATTATATTATCTCTTTACATGCTGAGGATTTGTCAAAGGGGAGCAGCACCTATGTTGGGAAATTGAGATCTAATTTCCTTGGAACCAAGTTCACAATCTTCGATGGGCAACCACCACATTCGGGAGCCAAGATCACTAAAAGTCGCTCCACAAGGCTAGTGAATCTGAAACAAGTTTCCCCGAAGGTCCCTGCAGGAAACTATCCAGTTGCACACATTTCATATGAACTAAATGTGTTGGGATCAAGGGGTCCAAGGAGAATGCAATGTATCATGGACGCTATTCCCGCTTCTGCAGTTGAACTTGGAGGAGTGGCTCCAACGCCGACCGAACTTTCTTTGAGCAATGTGGAATTGTTTCCATCATTCCCATTCCTAAGGTCAAAATCCAATGCGGATAGCTTGCTTTCTGAACCTTTGGGCAGTCAGAAAGATGGAATGTTGGTGCTGAGAAACAAAACTCCCAGGTGGCATGAACAGCTTCAATGCTGGTGTCTGAACTTTCATGGAAGAGTTACAATTGCTTCTGTGAAAAATTTTCAATTAGTTGCTTCTCCGGAAAATGATACACCTACACCAGAACATGAGAAGATCATCCTTCAGTTTGGAAAAGTGGGGAAGGATTTATTCACAATGGATTATCACACATCGTTTAACAGGGAATGGACGCTCAATTTGAAGAAACATTCATACTTGGTCAAATGTCCAGGATTTGGAATTCGGATTCGACACTTGGGCCTGGAACGTTACAGATGA 1200 47.0 MSLKSIFQDMRSRSRCVVQDASAPEPRDALDQSCWANMPQELLREVLIRIEASETFWPPRKSVVACAGVCRSWRAITKEIVRTPEVSGRLTFPISIKQPGPRDPLLQCFIKRNRSNQTYYLFLSLTSALSDDGKFLLAARKCKRPTYTDYIISLHAEDLSKGSSTYVGKLRSNFLGTKFTIFDGQPPHSGAKITKSRSTRLVNLKQVSPKVPAGNYPVAHISYELNVLGSRGPRRMQCIMDAIPASAVELGGVAPTPTELSLSNVELFPSFPFLRSKSNADSLLSEPLGSQKDGMLVLRNKTPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENDTPTPEHEKIILQFGKVGKDLFTMDYHTSFNREWTLNLKKHSYLVKCPGFGIRIRHLGLERYR 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7510890 7514616 - CaPI482276_06g005440.1 Cam06g0544 128844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0544 399 CDD F-box_AtTLP-like 35 79 - -
Cam06g0544 399 ProSitePatterns Tub family signature 1. 316 329 IPR018066 -
Cam06g0544 399 Pfam Tub family 97 363 IPR000007 -
Cam06g0544 399 SUPERFAMILY Tubby C-terminal domain-like 84 364 IPR025659 -
Cam06g0544 399 Gene3D Tubby Protein; Chain A 95 368 IPR025659 -
Cam06g0544 399 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Cam06g0544 399 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Cam06g0544 399 PRINTS Tubby superfamily signature 298 315 IPR000007 -
Cam06g0544 399 PRINTS Tubby superfamily signature 343 362 IPR000007 -
Cam06g0544 399 PRINTS Tubby superfamily signature 316 332 IPR000007 -
Cam06g0544 399 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Cam06g0544 399 PANTHER TUBBY-RELATED 22 366 - -
Cam06g0544 399 SUPERFAMILY F-box domain 26 79 IPR036047 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0544 Cam-Chr6:7510890 Cam08g0782 Cam-Chr8:8903032 4.50E-109 dispersed
Cam05g0673 Cam-Chr5:5886305 Cam06g0544 Cam-Chr6:7510890 6.60E-166 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52110 PF01167 Tub 9.70E-96 CL0395 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0544 K19600 - csv:101203437 701.049