Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0546 ATGGCGCCTGAAATGATGGTCGAATCGGGCTTGTCGATAGTGGATTTTGGGATGGAGTTGGTGGCAGATCATACTTCGGTAGTTTCTTTAAACTTATTTGTAGCTCTTCTTTGCGGTTGCATTGTTATTGGCCATTTGTTAGAGGAAAATCGATGGATCAACGAGTCCATTATAGCCCTTGTCATTGGCTTGTGTACCGGCATCATAATATTGCTAACAACTAGAGGGAAAAGCTCGCATTTATTTTTGTTTAATGAAGAGCTTTTCTTTATTTATCTCCTTCCGCCTATCATTTTCAACGCCGGGTTCCAAGTCAAGAAGAAGCAGTTTTTCCGCAACATCATGACCATAGTGCTTTTTGGTGCTTTTGGCACTCTCATATCGTTCTGTATTATATCATTAGGCGCTTTGCACTTCTTCCAGAAAATGAATATTGGTTCCCTTGATCTTGGAGATTATCTAGCTATTGGAGCAATTTTTTCTGCAACAGACTCTGTTTGCACCTTACAGGTTCTTAATCAGGACGAGACGCCTCTTCTGTATAGCCTGGTTTTTGGGGAAGGTGTTGTAAATGATGCCACATCGGTTGTGCTATTCAATGCAATCCAAAACTTTGACCTTTCTCATATGAATTCAAGCATCGTTCTGCAATTCATTGGGAACTTTTTGTATCTGTTCATTGCAAGTACTGTGCTGGGAATTTTAGTTGGCCTCCTTAGTGCATACATAATTAAGAAGCTTTACTTTGGCAGGCATTCTACTGATCGTGAAGTTGCTCTAATGATACTCATGGCGTATTTCTCTTATATGCTAGCTGAACTCTTCTATCTAAGTGCAATTCTCACTGTATTCTTTTGCGGCATTGTTATGTCTCACTATACATGGCATAACGTGACTGAAAGTTCAAGAGTCACTACAAAGCATGCTTTTGCCACCCTTTCTTTTGTTGCCGAGATCTTCATCTTTCTTTACGTTGGCATGGATGCGCTTGATATCGAGAAGTGGAGATTTGTTAGCCACAGTCCTGGAAAATCAATTGGGGTGAGCTCAATACTGTTGGGATTGGTTCTGGTTGGAAGAGCAGCATTCGTTTTTCCTTTATCCTCCTTGTCCAATCTGACCAAGAAGTCCTCGCATGAGAAACTCAACTTGGAACAACAAGTCACTATTTGGTGGGCTGGTCTCATGCGTGGTGCTGTATCCATGGCACTTGCATATAATCAGTTCACTAGGTCAGGCCACACCCATTTACCAGGCAATGCAATCATGATCACCAGTACCATCACAGTTGTTCTTTCCAGTACAGTGGTATTTGGAATGATGACGAAACCCCTAATAGGAATTTTGCTACCCCAACCAAAATACACAATGAGCATGCTCTCTTCCGAACCCTCTTCCCCAAAATCATTCACGGTCCCACTCCTCAGTAATGACCAAAATACCCCTTCCCCTCTTGGCCTGTTTCTGAGAATCCCATCCCATACAGTTCACCATTACTGGCGAAGATTTGATGACGCCTTTATGCGCCCTGTGTTTGGAGGACGGGGCTTTGTGCCCTTCATCCCAGGCTCCCCTACGGAAGACCCAACACAACAATGGCAAACTGAAGGAGTGGAAGCCATTGATGATAATAAAACCATTCTTATATAG 1650 42.67 MAPEMMVESGLSIVDFGMELVADHTSVVSLNLFVALLCGCIVIGHLLEENRWINESIIALVIGLCTGIIILLTTRGKSSHLFLFNEELFFIYLLPPIIFNAGFQVKKKQFFRNIMTIVLFGAFGTLISFCIISLGALHFFQKMNIGSLDLGDYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQNFDLSHMNSSIVLQFIGNFLYLFIASTVLGILVGLLSAYIIKKLYFGRHSTDREVALMILMAYFSYMLAELFYLSAILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRFVSHSPGKSIGVSSILLGLVLVGRAAFVFPLSSLSNLTKKSSHEKLNLEQQVTIWWAGLMRGAVSMALAYNQFTRSGHTHLPGNAIMITSTITVVLSSTVVFGMMTKPLIGILLPQPKYTMSMLSSEPSSPKSFTVPLLSNDQNTPSPLGLFLRIPSHTVHHYWRRFDDAFMRPVFGGRGFVPFIPGSPTEDPTQQWQTEGVEAIDDNKTILI 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7536890 7543225 + CaPI482276_06g005460.1 Cam06g0546 128846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0546 549 Pfam Sodium/hydrogen exchanger family 34 445 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Cam06g0546 549 PRINTS Na+/H+ exchanger signature 102 116 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam06g0546 549 PRINTS Na+/H+ exchanger signature 157 167 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam06g0546 549 PRINTS Na+/H+ exchanger signature 117 125 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam06g0546 549 PRINTS Na+/H+ exchanger signature 88 99 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam06g0546 549 PANTHER SODIUM/HYDROGEN EXCHANGER 26 536 IPR018422 GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(InterPro)|GO:0015385(PANTHER)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro)
Cam06g0546 549 Gene3D - 150 201 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0546 Cam-Chr6:7536890 Cam09g0631 Cam-Chr9:6229837 9.10E-161 dispersed
Cam01g1163 Cam-Chr1:18274111 Cam06g0546 Cam-Chr6:7536890 5.70E-31 transposed
Cam03g1661 Cam-Chr3:31744965 Cam06g0546 Cam-Chr6:7536890 3.20E-219 transposed
Cam09g2129 Cam-Chr9:35841769 Cam06g0546 Cam-Chr6:7536890 6.30E-167 transposed
Cam06g0546 Cam-Chr6:7536890 Cam09g0630 Cam-Chr9:6216549 1.70E-154 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0546 - - - 0.0