Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0620 ATGAATGGTTCTTCAACAACAAATTCTGAACCAGACATCTCTGAATATGTTGAAGTTGATCCTACCGGAAGATATGGAAGATACAATGAAGTTCTTGGCAAAGGAGCATCGAAGACAGTTTACAGAGCTTTTGATGAATACGATGGCATTGAAGTGGCGTGGAATCAAGTGAAGCTTTGTGATTTTCTTCAAACTCCTGAAGATCTTGAAAGGCTGTATAGAGAAATCCATTTGTTGAAGACACTAAAACACAAAAACATAATGAAATTTTATTCTTCTTGGGTTGACACTGCAAACAGAAACATTAACTTTGTAACAGAGATGTTCACTTCTGGGACTCTCAGACAATATAGGCTGAAGCATAAGAGAGTGAATATCAGAGCTGTGAAGCATTGGTGTAGACAGATTTTAAAAGGGCTTCTCTATCTTCACAGCCATGACCCTCCTGTGATCCACAGAGACCTTAAATGTGATAATATTTTTGTAAATGGGAATCAAGGGGAAGTCAAAATTGGTGATCTTGGCCTTGCTGCTATTCTTCGTAAATCCTATGTAGCTCGATGTGTTGGAACACCAGAGTTTATGGCTCCAGAGATTTATGAAGAGGAGTATAATGAATTGGTTGATATATATTCTTTTGGAATGTGTATTTTAGAGATGGTCACTTTTGAATATCCATACAGTGAATGCACTCACCCTGCTCAGATTTACAAGAAAGTTATCTCTGGGAAGAAACCAGATGCTCTGTATAAGGTAAAGGATCTCGAGGTTCGATATTTCGTCGAGAAATGTTTGGCTACTGTGTCAACTAGGCTGTCTGCTAGGGAGCTTTTAAACGACCCTTTTCTTCAAATTGATGGTTGTGATTCTTTACTGAGGCCAATAGAGTACTATTCAGAATATGATGAAGTGAACAATTCCCTTATCAGAGGAGGGCCTTTTTATGGAATTCCTCATGGTTCTTTGGATAATGGGTATGTGAATTATTTTGGTCATGAGGCTGGGAATGGTTTGGATTACTGTCCGATTGATAACGAAGCGAATGAAATCGATCTTTTCTCCTGTCAAGAGGATGAGCATTTGGCAGATGTTGATATCACTATTAAAGGGAGAAGAAGAGGTGACGATGATATCTTTCTTCGACTTCGGATTGCAGATAAAGAAGGTCGAATTCGAAACATCTACTTTCCCTTCGATTTAGAGAATGATAGTGCTTTGAGTGTTGCAAATGAGATGGTTTCTGAGCTTGACATTACTGATCAAGATGTGAAGAAGATTGCTGATATGATAGATGGTGAAATTGCTACATTGGTGCCAGAGTGGAAGAGGGGAAAAAGTTCAGAGGAAACTCCAAATTGCACGGATTCTAATGTTTGTCACAATTGTGCTTTAAACAATTCTCTTTTGGATTATGTATCGCCGAATAATCCCGCGACGAAGAACTTGCACATTCTTCAGTGTTCTCAAGAGCATGGCTGTGCTTCTATCCATGGACGTTTTGAAGAGATTACATACCAAGTTGAGGGGTCAGAACAATTCAATGGAGACGAAAACTTGCACAGAACAACGGAGAATTCAAACGATATCCATTACACCGATATTTGGGCGCAACGAGATGGACCAGATGCAGTTTCTCAAGAATCTTTAGAAACTTGCAATGAATCTGGAACATTGGAACAGCCGAAACTCGAGAAGGAAGAAAGTAATGTAAATATGGACAATGATCATCAAATGGAATTCCAAACAAGAAACTCTAGCTCATCAAATCCTTCGCTGTCCTTTGTCAACGATCACGAGAACGAAATTCGACAAGAACTAAGATGGCTCAAGGCTAAATATCAAATGCAGTTGAGGGAGCTAAGGGATCAACAGTTAGGAGTCAAGACCAAATCTCTTAGCTTGCATCCGAATCCCAACCTTGTGGAGACCGACAATGGAGCTTCGGTATCTTTGCTTTCGCCAAACTTCAATGAAGCAGCAAAAAGTAAGCCTGCCCTAACATCTCTCTCCGTTAGCAAGAATATCACTTCACATTCCTTCTATGCTGCTGTTGATAACATTATGGAAAACCAAACCTTCCAAGACGACAAAGTCGTTGTCGACGAGCCGAGTAGTCCCGAGCTGATGGTTGCTGCCAAGAGTTTCTATAGAGGAGCATTGTTTCCAAATTCTCTTCAAAGAGCAACCTCACTTCCTGTTGATGCTATAGACTTTTAG 2217 39.96 MNGSSTTNSEPDISEYVEVDPTGRYGRYNEVLGKGASKTVYRAFDEYDGIEVAWNQVKLCDFLQTPEDLERLYREIHLLKTLKHKNIMKFYSSWVDTANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILKGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSYVARCVGTPEFMAPEIYEEEYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVISGKKPDALYKVKDLEVRYFVEKCLATVSTRLSARELLNDPFLQIDGCDSLLRPIEYYSEYDEVNNSLIRGGPFYGIPHGSLDNGYVNYFGHEAGNGLDYCPIDNEANEIDLFSCQEDEHLADVDITIKGRRRGDDDIFLRLRIADKEGRIRNIYFPFDLENDSALSVANEMVSELDITDQDVKKIADMIDGEIATLVPEWKRGKSSEETPNCTDSNVCHNCALNNSLLDYVSPNNPATKNLHILQCSQEHGCASIHGRFEEITYQVEGSEQFNGDENLHRTTENSNDIHYTDIWAQRDGPDAVSQESLETCNESGTLEQPKLEKEESNVNMDNDHQMEFQTRNSSSSNPSLSFVNDHENEIRQELRWLKAKYQMQLRELRDQQLGVKTKSLSLHPNPNLVETDNGASVSLLSPNFNEAAKSKPALTSLSVSKNITSHSFYAAVDNIMENQTFQDDKVVVDEPSSPELMVAAKSFYRGALFPNSLQRATSLPVDAIDF 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8446147 8448945 + CaPI482276_06g006200.1 Cam06g0620 128920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0620 738 ProSiteProfiles Protein kinase domain profile. 26 283 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g0620 738 FunFam probable serine/threonine-protein kinase WNK9 109 288 - -
Cam06g0620 738 CDD STKc_WNK 24 283 - -
Cam06g0620 738 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 14 623 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Cam06g0620 738 SMART serkin_6 26 283 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g0620 738 FunFam Probable serine/threonine-protein kinase WNK1 11 107 - -
Cam06g0620 738 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 379 434 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Cam06g0620 738 Pfam Protein kinase domain 29 283 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g0620 738 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam06g0620 738 SUPERFAMILY Protein kinase-like (PK-like) 20 284 IPR011009 -
Cam06g0620 738 Gene3D Transferase(Phosphotransferase) domain 1 109 288 - -
Cam06g0620 738 Coils Coil 603 623 - -
Cam06g0620 738 Gene3D - 377 465 - -
Cam06g0620 738 Gene3D Phosphorylase Kinase; domain 1 11 107 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0620 Cam-Chr6:8446147 Cam06g0998 Cam-Chr6:15480120 7.90E-184 dispersed
Cam02g1972 Cam-Chr2:32861874 Cam06g0620 Cam-Chr6:8446147 5.90E-135 transposed
Cam03g0308 Cam-Chr3:4315165 Cam06g0620 Cam-Chr6:8446147 1.90E-141 transposed
Cam04g0648 Cam-Chr4:20508927 Cam06g0620 Cam-Chr6:8446147 2.50E-119 transposed
Cam05g0077 Cam-Chr5:1172140 Cam06g0620 Cam-Chr6:8446147 1.60E-127 transposed
Cam02g1702 Cam-Chr2:30052736 Cam06g0620 Cam-Chr6:8446147 1.20E-227 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85250 PF00069 Pkinase 4.30E-49 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0620 K08867 - csv:101210511 1366.29