Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam06g0702 | ATGAATTCTTCATTCTTTCACTCCCAAAACACCGATCTCTCGCCGGAATCTTCCTTTGGCTCCTTCGAATCCCTCCGATGGGAAGGTTTTCAAATAAACGACAACTCTCTGCCCTTCAACGAGAATGATTCCGGAGAAATGCTCCTTCACAGCTTAATCTCCGAGGCTGCCGTGTACCCGCCGGAGAATTCCCCCTGGCAGGCTCCGATCAAAGACGAGGAGGTTGATTCGCTTGGAGAAGAAGACCCCCACAAGAGAAAGTCATACAGAGGAGTCCGCCGGCGACCGTGGGGAAAATTCGCGGCGGAGATACGAGACTCGACCCGACATGGGGTTCGGGTTTGGCTCGGGACATTCGACAGCGCCGAGGCGGCTGCTTTGGCCTACGATCAAGCTGCTTTTTCAATGAGAGGCCCTGCTGCCGTTCTGAATTTTCCGGTGGAAAGAGTTCAGGAATCGCTCAAGGAGATGGAGATGATCAACTCCGCCGCATACGGAGGCGATGGCGAGGGAGACAGCGGATCTCCGGTGGTGGCTCTGAAGAGAAAACACTCTATGAGGAAGAAATTCACGAGAAGAAAGAGCAAAGAGAGAGATGGGATTGAGAAGATTGAGAATAATGTGGTAGTTTTGGAAGATCTTGGCTCTGATTATTTGGAAGAACTTCTAAAGTCGTCGGAGAATCTCCGACCGTGGTGA | 699 | 51.65 | MNSSFFHSQNTDLSPESSFGSFESLRWEGFQINDNSLPFNENDSGEMLLHSLISEAAVYPPENSPWQAPIKDEEVDSLGEEDPHKRKSYRGVRRRPWGKFAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGPAAVLNFPVERVQESLKEMEMINSAAYGGDGEGDSGSPVVALKRKHSMRKKFTRRKSKERDGIEKIENNVVVLEDLGSDYLEELLKSSENLRPW | 232 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 9450458 | 9451156 | + | CaPI482276_06g007020.1 | Cam06g0702 | 129002 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam06g0702 | 232 | PANTHER | DNA-BINDING DOMAIN | 54 | 188 | IPR044808 | GO:0003700(InterPro)|GO:0009873(InterPro) | |
Cam06g0702 | 232 | MobiDBLite | consensus disorder prediction | 63 | 89 | - | - | |
Cam06g0702 | 232 | CDD | AP2 | 87 | 147 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam06g0702 | 232 | MobiDBLite | consensus disorder prediction | 73 | 87 | - | - | |
Cam06g0702 | 232 | Gene3D | AP2/ERF domain | 87 | 148 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam06g0702 | 232 | SMART | rav1_2 | 88 | 152 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam06g0702 | 232 | FunFam | Ethylene-responsive transcription factor 2 | 87 | 148 | - | - | |
Cam06g0702 | 232 | SUPERFAMILY | DNA-binding domain | 88 | 148 | IPR016177 | GO:0003677(InterPro) | |
Cam06g0702 | 232 | ProSiteProfiles | AP2/ERF domain profile. | 88 | 146 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam06g0702 | 232 | Pfam | AP2 domain | 88 | 138 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam06g0702 | 232 | PRINTS | Ethylene responsive element binding protein signature | 89 | 100 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam06g0702 | 232 | PRINTS | Ethylene responsive element binding protein signature | 112 | 128 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g2403 | Cam-Chr1:35972713 | Cam06g0702 | Cam-Chr6:9450458 | 4.10E-27 | dispersed | |
Cam01g2404 | Cam-Chr1:35973595 | Cam06g0702 | Cam-Chr6:9450458 | 4.80E-25 | dispersed | |
Cam05g0492 | Cam-Chr5:4340406 | Cam06g0702 | Cam-Chr6:9450458 | 4.10E-67 | dispersed | |
Cam06g0702 | Cam-Chr6:9450458 | Cam07g0098 | Cam-Chr7:2132818 | 1.00E-41 | dispersed | |
Cam06g0701 | Cam-Chr6:9411834 | Cam06g0702 | Cam-Chr6:9450458 | 6.50E-22 | tandem | |
Cam05g1031 | Cam-Chr5:9311187 | Cam06g0702 | Cam-Chr6:9450458 | 5.80E-16 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52123 | PF00847 | AP2 | 6.00E-15 | CL0081 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam06g0702 | K14516 | - | csv:101206564 | 400.593 |