Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0702 ATGAATTCTTCATTCTTTCACTCCCAAAACACCGATCTCTCGCCGGAATCTTCCTTTGGCTCCTTCGAATCCCTCCGATGGGAAGGTTTTCAAATAAACGACAACTCTCTGCCCTTCAACGAGAATGATTCCGGAGAAATGCTCCTTCACAGCTTAATCTCCGAGGCTGCCGTGTACCCGCCGGAGAATTCCCCCTGGCAGGCTCCGATCAAAGACGAGGAGGTTGATTCGCTTGGAGAAGAAGACCCCCACAAGAGAAAGTCATACAGAGGAGTCCGCCGGCGACCGTGGGGAAAATTCGCGGCGGAGATACGAGACTCGACCCGACATGGGGTTCGGGTTTGGCTCGGGACATTCGACAGCGCCGAGGCGGCTGCTTTGGCCTACGATCAAGCTGCTTTTTCAATGAGAGGCCCTGCTGCCGTTCTGAATTTTCCGGTGGAAAGAGTTCAGGAATCGCTCAAGGAGATGGAGATGATCAACTCCGCCGCATACGGAGGCGATGGCGAGGGAGACAGCGGATCTCCGGTGGTGGCTCTGAAGAGAAAACACTCTATGAGGAAGAAATTCACGAGAAGAAAGAGCAAAGAGAGAGATGGGATTGAGAAGATTGAGAATAATGTGGTAGTTTTGGAAGATCTTGGCTCTGATTATTTGGAAGAACTTCTAAAGTCGTCGGAGAATCTCCGACCGTGGTGA 699 51.65 MNSSFFHSQNTDLSPESSFGSFESLRWEGFQINDNSLPFNENDSGEMLLHSLISEAAVYPPENSPWQAPIKDEEVDSLGEEDPHKRKSYRGVRRRPWGKFAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGPAAVLNFPVERVQESLKEMEMINSAAYGGDGEGDSGSPVVALKRKHSMRKKFTRRKSKERDGIEKIENNVVVLEDLGSDYLEELLKSSENLRPW 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9450458 9451156 + CaPI482276_06g007020.1 Cam06g0702 129002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0702 232 PANTHER DNA-BINDING DOMAIN 54 188 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cam06g0702 232 MobiDBLite consensus disorder prediction 63 89 - -
Cam06g0702 232 CDD AP2 87 147 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g0702 232 MobiDBLite consensus disorder prediction 73 87 - -
Cam06g0702 232 Gene3D AP2/ERF domain 87 148 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g0702 232 SMART rav1_2 88 152 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g0702 232 FunFam Ethylene-responsive transcription factor 2 87 148 - -
Cam06g0702 232 SUPERFAMILY DNA-binding domain 88 148 IPR016177 GO:0003677(InterPro)
Cam06g0702 232 ProSiteProfiles AP2/ERF domain profile. 88 146 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g0702 232 Pfam AP2 domain 88 138 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g0702 232 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g0702 232 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2403 Cam-Chr1:35972713 Cam06g0702 Cam-Chr6:9450458 4.10E-27 dispersed
Cam01g2404 Cam-Chr1:35973595 Cam06g0702 Cam-Chr6:9450458 4.80E-25 dispersed
Cam05g0492 Cam-Chr5:4340406 Cam06g0702 Cam-Chr6:9450458 4.10E-67 dispersed
Cam06g0702 Cam-Chr6:9450458 Cam07g0098 Cam-Chr7:2132818 1.00E-41 dispersed
Cam06g0701 Cam-Chr6:9411834 Cam06g0702 Cam-Chr6:9450458 6.50E-22 tandem
Cam05g1031 Cam-Chr5:9311187 Cam06g0702 Cam-Chr6:9450458 5.80E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52123 PF00847 AP2 6.00E-15 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0702 K14516 - csv:101206564 400.593