Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0716 ATGGGGCAGCAACCGTCCAAAGATGAGCTTGTGTATCAGCGCGCTAGCAACGGCGATGTTGAAGGGATTAAAGCCCTTTCTGCTGAAGGTGCCGGCCTTGAGTGGGTTGATAGGGAAGGAAAGACTCCGTTGATTGTTGCCTGTACGAAACCAGAGCCTTATAACGTGGCGAAAGCCTTGCTAGAACTCGGCGCCAATGTCAATGCGTATGGACCAGGCCGTAATGGTGGGACGCCATTGCACCATGCAGCTAGAAGAGGCTTGGAAAACACTGTTAAATTACTTCTTTCTTACAGAGCAAATACTTCGATTATTAATGATGCTTGCCAAACTGCATTGGAAATTGCGAGAGCAGCAGGGCACAAGAATGTTGTTCGTGCCATTGAGAATCATATTTGTCTATTCTCTGGTTGGATGCGCGAATTTTATGGGCCGGAGTTTCTCGAAGTACTAGCTCCTCATCTCCTTTCACGGAAAGTGTGGGTAGTTATTTTACCTTGTGGTTCTCGAAATCCTACGAAGCCTACTAAGTTGGAGCTTGCCATATATGCTAGCTTGCAGGATGCCCAACCTCGTCTAGTTATTCCATTGTGGAAATCATATTTAGAGGAACATAAGATACAGGAATCTGATCCATCTGTTGTCATTGTCGACAACACTCCAAACCTTGTCTCAAGAGGAGGAAGGAGGCGAAGACGGAGCTGTCACACCTCCTGGGAAGCCAGATGTCGATTTCGAAAATCAAAGACCGGACGCCTTCGACTTGCACCCGCTAATGAGTACGACAGACAACAACTTCAATGGTTTTGTGATGCTTGCAAAGGGATTCCTCAGCCAAAGGTGATGCAACCTGCAGCTTGGCATAATCACCAGAGCCCGATCAACATTGCAACCGTACCTCCTGGTTCAGAAGATCCGGAGCTCGTGATGGCCATAAATGCCTCTATTCAGTCAGCTATGCAGGAAAGAGGGAAGCTTCATACCCATCCATCAAGTTCTGAAGCAGGTGCCTCCAGTAGCAGTGGATTACCTCAACCTGCTCCTCCAAAAACAAGTTCTAGCAAATGGACAATGCACGAAGCCAGCCACAGTTACAATCCAAGCCATCGTGCCAAAACACCAAATGACACTGTCCCCGTCATCCAGATGACACACCCTCCAAATGTAGCCCCCACAGCTCCACCCCTTGCAGCCAAAACTTCTGAAGCTAGCACAAGTACAGTTGACTACCCGTTGGTCGATTCTGACCCCATAAGCGACATGCCATCTTCATCCGTTGGGAATGAAGGGAAACAAGGTAATGGCAACTCGACGTGTGTGATATGTCTGGATTCTCCAGTAGAGGGAGCCTGCGTCCCCTGTGGCCATATGGCTGGATGTATGTCTTGTCTAAATGAGATCAAAGCCAAGAATTGGGGCTGCCCAGTTTGTCGCACCAAGATCAATCAAGTCATAAAGTTGTATGTGCTTAATGGCCCACCGCTGCGACATGTAGTTTCTTACCGCTCTACAGACCAGCCGTTCAGCGTTCCTTTCTCCTTGCCGCATCTGAAACGGAATATGCTTCACACGTGTCATGAATTATTGGTAAAAACCACCACAAATGTGATATACGGTTATGCCATGGCACAAGAACCAGTTAGAGTCCTTGTCACTGGAGCTGCAGGACAAATCGGATATGCTCTTGTGCCTATGATTGCCAGAGGAGTATTGCTAGGACCTAACCAACCTGTCATCTTGCACATGCTTGATATCCCACCTGCTGCAGAGTCTTTGAATGGTGTAAAAATGGAGTTGGTGGATGCTGCTTTTCCACTCCTTAAAGGTGTTGTTGCTACAACTGATGTGGTTGAGGCCTGCACTGGTGTCAATATTGCCATTATGGTTGGTGGATTCCCAAGGAAAGAGGGTATGGAAAGAAAAGACGTGATGTCCAAAAATGTCTCGATCTACAAGGCTCAGGCTTCTGCCCTTGAAAAGCACGCTGCTGCCAACTGTAAGGTCTTGGTTGTTGCTAACCCGGCAAATACTAATGCATTGATCTTGAAGGAGTTTGCTCCTTCCATCCCGGAGAAAAATATTTCTTGCTTGACGAGATTGGACCACAATAGGGCATTGGGCCAAATTTCAGAGAGATTGAATGTTCAAGTATCTGAAGTTAAGAATGTTATTATCTGGGGTAACCATTCATCAACACAATACCCTGATGTCAACCATGCTACTGTCAAGTTACCATCTGGGGAGGAGAAATCTGTCCGTGAGCTTGTTGCTGACGATGAATGGTTGAATGGAGAGTTTATTACCACTGTTCAACAACGTGGAGCTGCTATCATCAAAGCCCGGAAGCTCTCAAGTGCATTGTCAGCTGCTAGTGCAGCTTGTGATCACATTCGTGATTGGGTGCTTGGAACTCCGGAGGGCACCTGGGTTTCCATGGGAGTTTATTCTGATGGATCATACAATGTACCAGCTGGACTAATCTACTCATTCCCCGTGACCTGCCGTAACGGTGAATGGTCAATTGTGCAAGGACTTTCGGTTGATGAATTCTCTAGGAAGAAACTGGACTTGACTGCCGAGGAGCTGACTGAGGAAAAGGCGTTGGCTTACTCATGCCTCTCCTAA 2625 47.28 MGQQPSKDELVYQRASNGDVEGIKALSAEGAGLEWVDREGKTPLIVACTKPEPYNVAKALLELGANVNAYGPGRNGGTPLHHAARRGLENTVKLLLSYRANTSIINDACQTALEIARAAGHKNVVRAIENHICLFSGWMREFYGPEFLEVLAPHLLSRKVWVVILPCGSRNPTKPTKLELAIYASLQDAQPRLVIPLWKSYLEEHKIQESDPSVVIVDNTPNLVSRGGRRRRRSCHTSWEARCRFRKSKTGRLRLAPANEYDRQQLQWFCDACKGIPQPKVMQPAAWHNHQSPINIATVPPGSEDPELVMAINASIQSAMQERGKLHTHPSSSEAGASSSSGLPQPAPPKTSSSKWTMHEASHSYNPSHRAKTPNDTVPVIQMTHPPNVAPTAPPLAAKTSEASTSTVDYPLVDSDPISDMPSSSVGNEGKQGNGNSTCVICLDSPVEGACVPCGHMAGCMSCLNEIKAKNWGCPVCRTKINQVIKLYVLNGPPLRHVVSYRSTDQPFSVPFSLPHLKRNMLHTCHELLVKTTTNVIYGYAMAQEPVRVLVTGAAGQIGYALVPMIARGVLLGPNQPVILHMLDIPPAAESLNGVKMELVDAAFPLLKGVVATTDVVEACTGVNIAIMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAANCKVLVVANPANTNALILKEFAPSIPEKNISCLTRLDHNRALGQISERLNVQVSEVKNVIIWGNHSSTQYPDVNHATVKLPSGEEKSVRELVADDEWLNGEFITTVQQRGAAIIKARKLSSALSAASAACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWSIVQGLSVDEFSRKKLDLTAEELTEEKALAYSCLS 874
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9703960 9713810 - CaPI482276_06g007160.1 Cam06g0716 129016

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0716 874 Gene3D - 4 135 IPR036770 -
Cam06g0716 874 SUPERFAMILY LDH C-terminal domain-like 698 873 IPR015955 GO:0003824(InterPro)|GO:0016616(InterPro)
Cam06g0716 874 ProSitePatterns Malate dehydrogenase active site signature. 697 709 IPR001252 GO:0006108(InterPro)|GO:0016615(InterPro)
Cam06g0716 874 ProSiteProfiles Zinc finger RING-type profile. 439 478 IPR001841 -
Cam06g0716 874 Pfam Zinc finger, C3HC4 type (RING finger) 437 484 - -
Cam06g0716 874 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 424 492 IPR013083 -
Cam06g0716 874 SUPERFAMILY RING/U-box 434 484 - -
Cam06g0716 874 MobiDBLite consensus disorder prediction 320 396 - -
Cam06g0716 874 ProSiteProfiles Ankyrin repeat region circular profile. 75 107 - -
Cam06g0716 874 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 543 696 IPR036291 -
Cam06g0716 874 Gene3D - 544 696 - -
Cam06g0716 874 MobiDBLite consensus disorder prediction 320 382 - -
Cam06g0716 874 SUPERFAMILY Ankyrin repeat 12 133 IPR036770 -
Cam06g0716 874 SMART ANK_2a 75 104 IPR002110 GO:0005515(InterPro)
Cam06g0716 874 SMART ANK_2a 39 69 IPR002110 GO:0005515(InterPro)
Cam06g0716 874 FunFam Malate dehydrogenase 544 696 - -
Cam06g0716 874 CDD MDH_cytoplasmic_cytosolic 545 870 IPR011274 GO:0006108(InterPro)|GO:0030060(InterPro)
Cam06g0716 874 NCBIfam malate dehydrogenase, NAD-dependent 548 871 IPR011274 GO:0006108(InterPro)|GO:0030060(InterPro)
Cam06g0716 874 FunFam Malate dehydrogenase 697 874 - -
Cam06g0716 874 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Cam06g0716 874 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 698 867 IPR022383 GO:0016616(InterPro)
Cam06g0716 874 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515(InterPro)
Cam06g0716 874 CDD RING-HC_XBAT35-like 436 488 - -
Cam06g0716 874 Pfam lactate/malate dehydrogenase, NAD binding domain 547 694 IPR001236 GO:0016491(InterPro)
Cam06g0716 874 Gene3D - 697 874 IPR015955 GO:0003824(InterPro)|GO:0016616(InterPro)
Cam06g0716 874 PANTHER MALATE DEHYDROGENASE 543 871 IPR010945 GO:0006099(PANTHER)|GO:0006107(PANTHER)|GO:0006108(InterPro)|GO:0006108(PANTHER)|GO:0006734(PANTHER)|GO:0016615(InterPro)|GO:0030060(PANTHER)
Cam06g0716 874 Pfam Ankyrin repeat 40 69 IPR002110 GO:0005515(InterPro)
Cam06g0716 874 SMART ring_2 439 477 IPR001841 -
Cam06g0716 874 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515(InterPro)
Cam06g0716 874 NCBIfam malate dehydrogenase 545 868 IPR010945 GO:0006108(InterPro)|GO:0016615(InterPro)
Cam06g0716 874 Pfam Ankyrin repeats (3 copies) 75 128 IPR002110 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0716 K00025 - - csv:101204634 862.448
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0038 Cam-Chr5:910111 Cam06g0716 Cam-Chr6:9703960 4.50E-163 transposed
Cam05g0480 Cam-Chr5:4259337 Cam06g0716 Cam-Chr6:9703960 4.50E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g717 . . . . . Bpe14g01258 . . . Cmo17g00160 Cma06g01318 Cma14g01815 Car06g01136 . . . . . . . . . . . Cla06g00667 Cam06g0716 . Cco06g0731 Clacu06g0707 Cmu06g0694 Cre06g1464 . . . . Lsi05g01735 Csa02g01059 Chy05g00319 Cme06g00486 . Blo07g00266 Bda11g00635 Bda13g00059 . . Bma02g00778 . . Cmo06g01328 Cmo14g01854 . Cma17g00162 . Car17g00143 . . Bhi12g01615 . . . . . Lcy13g0378 Cla05g00442 Cam05g0480 Cec05g0490 Cco05g0490 Clacu05g0476 Cmu05g0455 Cre05g0517 Lsi09g01232 Csa03g01204 Chy06g00467 Cme05g00571
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002162 2 4 2 1 1 2 3 2 2 2 2 2 3 2 2 3 2 2 1 2 2 2 2 2 2 2 2 3 2 2 63