Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0790 ATGGCGGCACTTAGTAAATGGCATTCTCTCTCTCTGTTTGCCCTTGCATTGGTGTTCTTCGTAACAATCGCTCTCGTTCGCAAAGAAGAGACCTCTGAAATTCGGACTGTGTTAGCGACGGAGTTTCAGAGCTCTAGCGACTCATCAATGGCGATTAGGCTGGAAAGTGATGATATGGAGCAAGAATTCAACAATGAACATGCTGTGGATAATCCTGACGAGATTGCTGCCTCTGTTGAGATGAGTATCCGTAATAGCACTGAAAGGAGGAAGTTGGGATTCTTCTCCTGTGGAACAGGCAATCCCATTGATGACTGCTGGCGTTGTGACTCCAATTGGCACCGCAACCGGAAGCGCCTTGCGGAATGTGGCATTGGGTTTGGTCGGAATGCTATTGGTGGACGTGATGGTCGTTTCTATGTCGTAACTGATTCGAGTGACAACGATCCAGTGAACCCGAAGCCAGGGACTCTTCGTCATGCTGTCATTCAAGAGAAACCTCTTTGGATTGTGTTCAAAAGGGACATGGTGATTCAATTGAAACAGGAGCTCATCATGAACAGTTTTAAGACAATTGATGCTCGAGGGGTAAATGTACATATTGCCAATGGCGCTTGCATCACAATCCAGTTTGTGACTAACATCATTATCCATGGTCTTCACATCCATGATTGCAAGCCCACAGGAAATGCCATGGTGAGAAGCTCTCCAACTCATTTTGGGTGGAGAACCATGGCTGATGGAGATGCCATTTCCATCTTTGGGTCAAGTCATATATGGATTGATCACAATTCACTCTCTAATTGTGCTGATGGACTTGTTGATGCTGTCATGGGCTCAACTGCAATCACAATCTCCAACAATCACTTCACTCACCACAATGAGGTGATGCTTCTGGGCCATAGTGATTCCTACACAAAGGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGAGAGGGGCTCATTCAAAGAATGCCAAGATGTAGGCATGGCTATTTCCATGTGGTGAACAATGACTATACTCACTGGGAGATGTATGCCATTGGTGGGAGTGCAAACCCCACCATCAATAGTCAAGGCAACAGATATGCTGCACCAACCAACCCTTTTGCCAAAGAGGTGACGAAGCGAGTCGAAACACCAGAGAGGGAATGGAAGGGGTGGAATTGGAGATCAGAAGGAGATATGTTGTTGAATGGTGCTTATTTCACTCCATCAGGTGCTGGAGCTTCAGCAAGCTATGCCAGAGCCTCCAGCTTAGGAGCCAAATCTGCTTCCATGGTTGGCTCCATTACTTCTTCTGCAGCCTGTTCGCACCGCCGTTCCGCCGCTCTAGATTCGACCCGTTCACACCCTGTCGACTACCGCTTCACTGCTTTCATCAATAACCGTGGCTTAGATCCGTTCGAGAAGAATGCGTTCGCACTACTTGCTTGA 1446 47.1 MAALSKWHSLSLFALALVFFVTIALVRKEETSEIRTVLATEFQSSSDSSMAIRLESDDMEQEFNNEHAVDNPDEIAASVEMSIRNSTERRKLGFFSCGTGNPIDDCWRCDSNWHRNRKRLAECGIGFGRNAIGGRDGRFYVVTDSSDNDPVNPKPGTLRHAVIQEKPLWIVFKRDMVIQLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETPEREWKGWNWRSEGDMLLNGAYFTPSGAGASASYARASSLGAKSASMVGSITSSAACSHRRSAALDSTRSHPVDYRFTAFINNRGLDPFEKNAFALLA 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10686862 10694995 - CaPI482276_06g007900.1 Cam06g0790 129090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0790 481 Pfam Pectate lyase 187 364 IPR002022 -
Cam06g0790 481 SUPERFAMILY Pectin lyase-like 77 418 IPR011050 -
Cam06g0790 481 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Cam06g0790 481 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Cam06g0790 481 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Cam06g0790 481 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Cam06g0790 481 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Cam06g0790 481 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Cam06g0790 481 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Cam06g0790 481 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Cam06g0790 481 SMART amb_all 175 372 IPR002022 -
Cam06g0790 481 Gene3D - 100 441 IPR012334 -
Cam06g0790 481 PANTHER PECTATE LYASE 18-RELATED 17 440 IPR045032 GO:0030570(InterPro)
Cam06g0790 481 FunFam Pectate lyase 100 441 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2332 Cam-Chr5:31373001 Cam06g0790 Cam-Chr6:10686862 9.80E-155 dispersed
Cam06g0790 Cam-Chr6:10686862 Cam09g1998 Cam-Chr9:34622976 1.50E-167 dispersed
Cam05g0405 Cam-Chr5:3733631 Cam06g0790 Cam-Chr6:10686862 4.40E-214 wgd
Cam06g0790 Cam-Chr6:10686862 Cam07g0165 Cam-Chr7:2858740 2.20E-190 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0790 K01728 - csv:101217580 847.81