Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam06g0814 | ATGATGGTTGCAGCTTCTCAATCTCGTGGTGTGCCGTACGACTGCGCCTCAAAGTATAGAAGTCGAAGAAGAAGAATTAGGGCAAGCGAAGAACGGGCTATTATCGTAATTATGCTCCAAGATCGAGGGGCTGCTTCTTTCTTTTCATTTCTCTGCAAATTCTTGTGGTTCGATTTGGTTAATATCAAATGGTCGACCACCACTGGTCATCTTATCTACAAGCTTGGAGGAATTGACAAGCGTGTGATTGAGAGATTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCTTGGGTGCTCGACAAACTTAAGGCAGAGCGTGAACGTGGTATTACCATCGACATTGCTCTGTGGAAGTTTGAGACCACCAAGTACTACTGCACAGTCATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACTGGTACTTCACAGGCTGACTGTGCTGTCCTCATTATTGACTCCACTACTGGTGGTTTTGAGGCTGGTATTTCCAAGGATGGTCAGACCCGTGAGCACGCTCTTCTTGCTTTCACCCTTGGTGTCAAGCAAATGATCTGCTGCTGCAACAAGATGGATGCTACCACTCCCAAATACTCCAAGGCAAGGTACGACGAAATCGTGAAGGAAGTCTCATCTTACCTCAAGAAGGTCGGATACAACCCAGAAAAAATCCCTTTCGTTCCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCCACCAACCTTGACTGGTACAAGGGACCAACCCTCCTTGAGGCTCTTGACTTGATCTCTGAGCCCAAGAGGCCCTCAGACAAGCCCCTCCGTCTCCCACTTCAGGACGTTTACAAGATTGGTGGTATTGGAACTGTCCCTGTTGGACGTGTTGAAACTGGTATCCTCAAGCCTGGTATGGTTGTCACCTTTGGACCAACTGGACTCACCACTGAAGTTAAGTCTGTTGAAATGCACCACGAGTCTCTGCCAGAGGCCTTGCCTGGTGACAATGTCGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTCGTTGCCTCAAACTCCAAGGATGACCCTGCCAAGGAGGCTGCCAACTTCACATCCCAGGTCATCATCATGAACCACCCTGGCCAGATTGGTAACGGTTATGCCCCAGTCCTTGATTGCCACACCTCCCACATTGCTGTTAAGTTTGCTGAGATCCTCACCAAGATTGATCGTCGATCTGGTAAGGAGCTCGAAAAGGAGCCCAAATTCTTGAAGAACGGTGATGCCGGTATGGTTAAGATGGTTCCGACCAAGCCAATGGTTGTGGAGACGTTCTCCTCATACCCACCATTGGGTCGTTTTGCTGTCCGTGATATGCGTCAAACCGTTGCTGTTGGTGTGATCAAGAGTGTGGAGAAGAAGGACCCAACAGGAGCCAAGGTCACCAAATCCGCTGTCAAGAAGAAATAA | 1476 | 48.51 | MMVAASQSRGVPYDCASKYRSRRRRIRASEERAIIVIMLQDRGAASFFSFLCKFLWFDLVNIKWSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLISEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFGPTGLTTEVKSVEMHHESLPEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSSYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKSAVKKK | 491 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 11211540 | 11214416 | - | CaPI482276_06g008140.1 | Cam06g0814 | 129114 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam06g0814 | 491 | FunFam | Elongation factor 1-alpha | 56 | 270 | - | - | |
| Cam06g0814 | 491 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 49 | 274 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Cam06g0814 | 491 | NCBIfam | translation elongation factor EF-1 subunit alpha | 62 | 477 | IPR004539 | GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro) | |
| Cam06g0814 | 491 | SUPERFAMILY | Translation proteins | 275 | 365 | IPR009000 | - | |
| Cam06g0814 | 491 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 370 | 473 | IPR009001 | - | |
| Cam06g0814 | 491 | PRINTS | GTP-binding elongation factor signature | 192 | 201 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Cam06g0814 | 491 | PRINTS | GTP-binding elongation factor signature | 132 | 142 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Cam06g0814 | 491 | PRINTS | GTP-binding elongation factor signature | 112 | 120 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Cam06g0814 | 491 | PRINTS | GTP-binding elongation factor signature | 148 | 159 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Cam06g0814 | 491 | Gene3D | - | 60 | 270 | IPR027417 | - | |
| Cam06g0814 | 491 | Gene3D | Translation factors | 273 | 360 | - | - | |
| Cam06g0814 | 491 | PANTHER | TRANSLATION FACTOR | 61 | 471 | IPR050100 | GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0006412(PANTHER)|GO:0006414(PANTHER) | |
| Cam06g0814 | 491 | Pfam | Elongation factor Tu GTP binding domain | 65 | 265 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Cam06g0814 | 491 | Pfam | GTP-eEF1A C-terminal domain-like | 371 | 471 | IPR054696 | - | |
| Cam06g0814 | 491 | FunFam | Elongation factor 1-alpha | 367 | 474 | - | - | |
| Cam06g0814 | 491 | Pfam | Elongation factor Tu domain 2 | 292 | 357 | IPR004161 | GO:0005525(InterPro) | |
| Cam06g0814 | 491 | CDD | EF1_alpha_III | 367 | 470 | - | - | |
| Cam06g0814 | 491 | FunFam | Elongation factor 1-alpha | 273 | 360 | - | - | |
| Cam06g0814 | 491 | CDD | EF1_alpha_II | 274 | 364 | - | - | |
| Cam06g0814 | 491 | CDD | EF1_alpha | 65 | 271 | - | - | |
| Cam06g0814 | 491 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 105 | 120 | IPR031157 | - | |
| Cam06g0814 | 491 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 65 | 293 | IPR027417 | - | |
| Cam06g0814 | 491 | Gene3D | Translation factors | 367 | 474 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam06g0814 | Cam-Chr6:11211540 | Cam09g2085 | Cam-Chr9:35413209 | 6.50E-243 | dispersed | |
| Cam06g0814 | Cam-Chr6:11211540 | Cam02g2168 | Cam-Chr2:34447096 | 3.10E-245 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam06g0814 | K03231 | - | csv:101215193 | 847.04 |