Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0840 ATGGTGAAGAAACGTGTGCCGGATTGGCTCAATAGCTCTCTTTGGTCCTCCACTCCCGCTGTCGACGACGATCGCCTCCAGCGCTACACTTCCGAGCCGGCAGCCACCACTTCGTCCCCGGAACCCGTCGTCGAACCTCCTGTTCCGGTTCCGCCTCCGTCTGCGAGCACCGCCGTTAGAACCGAGTCTCCCAAGTCTGATACTCGAGACTCCAGGGCTAATAACAATGTCACCAACGAAGATAATGGCACTTCCTCAGGCCCTTCTGCTGAGGATGTATCTCGCCAGGCACAGCTTGTTGTTGAGTTGTCGAAGAAGATCATAAATCTGCGTGAATTGCGTAAAATTGCGTCTCAGGGCATACCGGATGGTCCAGGAATTCGTTCAACCGTCTGGAAACTCCTATTGGGTTATCTGCCACCAGATCGTGGGCTCTGGACGTCTGAGTTAGCTAAAAAGAGGTCTCAATACAAGCATTTTAAAGAAGAGCTTTTGATGAATCCTTCCGAAATTTCAAGGAGGTTGGAGAAGGCCAAAAGTTACGAGCATGACGAAACGAACAAGGGTCCACTCTCAAGGTCAGAAATAAGTCAAGAGGAACATCCTTTGAGTCTTGGGAAAACGAGCATCTGGAATCAGTACTTCCAGGACTCTGAGATTATAGAACAGATTGACCGAGATGTGAAGCGTACTCATCCAGATATGCACTTCTTCTCTGGGGACTCATCACTTGCAAAATCTAATCAGGAGGCCCTGAGAAATATCTTAATTGTATTTGCAAAGTTGAATCCAGGAATTAGATATGTACAAGGGATGAATGAAATTTTAGCTCCTCTATTCTATGTATTTAGAAGTGATCCTGATGAAGATAATGCGGCATCTGCTGAAGCAGACACGTTCTTTTGTTTTGTTGAGTTATTGAGTGGATTTAGGGATCATTTCTGCCAGCAATTGGATAATAGTGTTGTGGGAATTCGTGCCACAATCACAAAGTTGTCTCAACTTCTGAAGGAGCATGATGAAGAGCTCTGGCGTCACCTTGAGATCACAACCAAAGTAAACCCCCAGTTTTATGCATTTAGGTGGATCACTCTCCTCTTGACCCAAGAGTTCAATTTTGCAGACAGCCTTCACATATGGGATACAATTTTGAGTGATCCTGAGGGTCCTCTGGAAACACTCCTCCGAATATGCTGCTCGATGTTGATTCTCATTAGACGACGCCTACTTGCAGGCGATTTTACGGCTAATCTCAAACTGCTACAACACTATCCCCCAGCAAACATCAGTCATTTGCTCTACGTCGCGAACAAGTTGCGTAAACAACCTTCGATCTGA 1338 46.26 MVKKRVPDWLNSSLWSSTPAVDDDRLQRYTSEPAATTSSPEPVVEPPVPVPPPSASTAVRTESPKSDTRDSRANNNVTNEDNGTSSGPSAEDVSRQAQLVVELSKKIINLRELRKIASQGIPDGPGIRSTVWKLLLGYLPPDRGLWTSELAKKRSQYKHFKEELLMNPSEISRRLEKAKSYEHDETNKGPLSRSEISQEEHPLSLGKTSIWNQYFQDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQEALRNILIVFAKLNPGIRYVQGMNEILAPLFYVFRSDPDEDNAASAEADTFFCFVELLSGFRDHFCQQLDNSVVGIRATITKLSQLLKEHDEELWRHLEITTKVNPQFYAFRWITLLLTQEFNFADSLHIWDTILSDPEGPLETLLRICCSMLILIRRRLLAGDFTANLKLLQHYPPANISHLLYVANKLRKQPSI 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11846885 11852350 - CaPI482276_06g008400.1 Cam06g0840 129140

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0840 445 ProSiteProfiles TBC/rab GAP domain profile. 122 387 IPR000195 -
Cam06g0840 445 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 94 432 - GO:0005096(PANTHER)|GO:0006886(PANTHER)|GO:0090630(PANTHER)
Cam06g0840 445 SMART tbc_4 117 413 IPR000195 -
Cam06g0840 445 MobiDBLite consensus disorder prediction 70 93 - -
Cam06g0840 445 MobiDBLite consensus disorder prediction 176 190 - -
Cam06g0840 445 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 201 315 - -
Cam06g0840 445 MobiDBLite consensus disorder prediction 10 38 - -
Cam06g0840 445 MobiDBLite consensus disorder prediction 1 93 - -
Cam06g0840 445 FunFam TBC1 domain family member 94 148 - -
Cam06g0840 445 Pfam Rab-GTPase-TBC domain 127 409 IPR000195 -
Cam06g0840 445 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 101 346 IPR035969 -
Cam06g0840 445 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 324 441 IPR035969 -
Cam06g0840 445 Gene3D - 91 145 - -
Cam06g0840 445 MobiDBLite consensus disorder prediction 176 201 - -
Cam06g0840 445 FunFam TBC1 domain family member 13 204 315 - -
Cam06g0840 445 Gene3D - 323 444 - -
Cam06g0840 445 MobiDBLite consensus disorder prediction 40 54 - -
Cam06g0840 445 FunFam TBC1 domain family member 13 322 443 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0840 K24796 - - csv:101208456 850.121
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0840 Cam-Chr6:11846885 Cam07g1531 Cam-Chr7:29947379 6.30E-27 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g997 . . Bda03g01131 . Bpe04g01074 . Bma04g01171 . . Cmo17g00086 . . . . . . . . . . . . . . Cla06g00785 Cam06g0840 Cec06g0855 Cco06g0869 Clacu06g0843 Cmu06g0815 Cre06g1595 . . . . . Csa02g00897 . . . . . . . . . . . . . . Cma17g00079 . Car17g00073 Cpe12g00073 . Bhi12g01466 . . . . . Lcy13g0479 . . . . . . . Lsi09g01113 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004668 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 0 2 1 1 42