Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0864 ATGGATAATTTACCCCCGCTAAATGCTCAAACTGATAGTGCGGAACCGGGTAATGTTGTTTCATCTGATGTTCCTGCTAAAAGACTAGCTAGGCAGCTGGATTTTACGGGGTTTGGTGGTGCAGTCTTGCCGGAGCATCCTCATTTTCAGTCTCAGCCTCCGTGTCAACAATCAGAGTCACCGGCCGTCATGGTGGTGCAGAGTCAGTCACAACCACAGTCCCCACAACATTTGACGGTTTTGCCCATTGTAACAAAAGCGTCTCATCCTGCGAGAAAGCCAGATTCTCCAAAGTCAAGATCAAGATCTAGTGTTGAAACAAAAGATGATACTCCAAAGAAACAAAAACAGTGCAACTGCAAACACTCACGCTGCTTAAAGCTGTACTGCGAGTGCTTTGCATCTGGAATATACTGTGATGGTTGCAATTGCACAAATTGCCATAACAATGTTGAGAATGAAGCTTCTAGGAGAGAAGCAGTCGAAACTACTTTAGAACGTAATCCAAATGCATTCCGACCAAAAATTGCTAGCAGCCCACATGGAACACTAGAGAGCAGGGATGAGATTGGAGAAGTAGTAATGCTGGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGTTGCTTAAAGAAGTATTGTGAGTGCTTTCAGGCCAATATTCTCTGCTCTGAAAACTGCAAGTGCATGGACTGTAAGAATTTTGAAGGCAGTGAAGAGAGACAGGCTCTTTTCCATGGTGACCATGCCAACAACTTGGCTTATATTCAACAGGCAGCAAATGCTGCAATAACTGGAGCTATTGGATCCTCTGGTTATGCTTGCCTTCCCACTTCAAAGAAAAGAAAAGGTCCAGAGCTATGCTTTGGCCCTGTAGGGAAGGATTCCCCCCTCAACAGCATACCACAATTTCATCAGGCAAATAATGTAATGTCTTCAGGCACGTCTACTTCATCTCCCTTCCCAGTTGCTCATGTTGGCAATGGCAGCCCTGCAGCATCGGGGCCTTCAAAGTTCTCATTCAGGTCCTTATTAGCTGACCTCATCCAACCGCATGACTTGAAGGAGCTTTGCTCAGTTTTAGTGGTGTTTTCAAGTGAAGTTGCCAAGAAAATAGCAGAACAAAGAAATGCTGAGAAACAGATAAATGACCCACCACAGATTTCTCGCGCTTCATCTACTGTTGATGAGTCACAGCATCAGAAGGCCGAAGAGAAAGCTGCAGATGGCGAGTGTGGAAGTTCAAACCGAAGTGATAGGAGTGTACATGATAATTCCAATTCAGATAGTTCGGATATTACAAAAGCAAGGCCGATGTCCCCTGGAACTTTAGCTTTAATGTGTGATGAACGAGATACAATGTTCATGGGAGCTGGTCTAGCTGATGGGTCGGCAGGCCATGATTGCAACACATCATCACATATGCCTGATAAGTCTGTGTCAGAAGTCTACATCGAGCAAGAACGGATTGTGTTGACAAAGTTTCGAGATTGTCTTAATAAACTCATCACTCTGGGAGAGATAAAAGAAACAAAATTCACTTGTAGAAGCGAAGTGGGGAATGAAAATCTCAGCAACAATTTCACCTCAAATAATGGGTGCCAACAGAGATCTATTAGCAATGGGGTTGTAAAAAATGTGGCTCTCTCGGCACACAGAATACCGCCAGTCGGCGCTGCAGCTCGTCATCCAAATAACGATCTCCTACTCAAAATTCTACCACTTCCTAAAAATAGTTTGCTTCCTGAGACTGGTCTGTTCAAGTTAGTTGGTTGTCTCATTTTAACGTATATCATTCGTTCTTATATCATCATTAGAATTCTAGGCGAATTTTTTGTTCCAAATTTCAATCGTAGATAG 1863 43.53 MDNLPPLNAQTDSAEPGNVVSSDVPAKRLARQLDFTGFGGAVLPEHPHFQSQPPCQQSESPAVMVVQSQSQPQSPQHLTVLPIVTKASHPARKPDSPKSRSRSSVETKDDTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCTNCHNNVENEASRREAVETTLERNPNAFRPKIASSPHGTLESRDEIGEVVMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHANNLAYIQQAANAAITGAIGSSGYACLPTSKKRKGPELCFGPVGKDSPLNSIPQFHQANNVMSSGTSTSSPFPVAHVGNGSPAASGPSKFSFRSLLADLIQPHDLKELCSVLVVFSSEVAKKIAEQRNAEKQINDPPQISRASSTVDESQHQKAEEKAADGECGSSNRSDRSVHDNSNSDSSDITKARPMSPGTLALMCDERDTMFMGAGLADGSAGHDCNTSSHMPDKSVSEVYIEQERIVLTKFRDCLNKLITLGEIKETKFTCRSEVGNENLSNNFTSNNGCQQRSISNGVVKNVALSAHRIPPVGAAARHPNNDLLLKILPLPKNSLLPETGLFKLVGCLILTYIIRSYIIIRILGEFFVPNFNRR 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12389711 12395524 + CaPI482276_06g008640.1 Cam06g0864 129164

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0864 620 MobiDBLite consensus disorder prediction 398 427 - -
Cam06g0864 620 MobiDBLite consensus disorder prediction 381 397 - -
Cam06g0864 620 SMART CXC_2 198 239 IPR033467 -
Cam06g0864 620 SMART CXC_2 113 153 IPR033467 -
Cam06g0864 620 MobiDBLite consensus disorder prediction 91 116 - -
Cam06g0864 620 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 201 235 IPR005172 -
Cam06g0864 620 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 115 150 IPR005172 -
Cam06g0864 620 MobiDBLite consensus disorder prediction 40 116 - -
Cam06g0864 620 PANTHER TESMIN/TSO1-RELATED 44 514 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Cam06g0864 620 MobiDBLite consensus disorder prediction 50 81 - -
Cam06g0864 620 MobiDBLite consensus disorder prediction 1 18 - -
Cam06g0864 620 ProSiteProfiles CRC domain profile. 114 238 IPR005172 -
Cam06g0864 620 MobiDBLite consensus disorder prediction 1 25 - -
Cam06g0864 620 MobiDBLite consensus disorder prediction 377 442 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0864 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0864 Cam-Chr6:12389711 Cam11g0315 Cam-Chr11:4673378 7.60E-172 dispersed
Cam06g0864 Cam-Chr6:12389711 Cam06g0639 Cam-Chr6:8596535 6.90E-32 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam08g1774 . 325 450 CPP Transcription Factor Family AT3G22780 56.3 5.6e-38 156.4
Cam08g1774 . 297 450 CPP Transcription Factor Family AT4G14770 50.6 1.2e-39 161.8
Cam11g0315 . 92 521 CPP Transcription Factor Family AT2G20110 61.9 5.5e-142 501.5
Cam06g0864 . 30 544 CPP Transcription Factor Family AT2G20110 50.7 1.1e-126 450.7
Cam08g1774 . 325 459 CPP Transcription Factor Family AT3G04850 51.4 1.3e-36 151.8
Cam11g0315 . 29 528 CPP Transcription Factor Family AT4G29000 56.8 1.5e-151 533.5
Cam06g0864 . 20 543 CPP Transcription Factor Family AT4G29000 53.3 3.8e-144 508.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002094 2 3 2 1 2 2 4 2 2 2 0 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52133 PF03638 TCR 3.30E-12 No_clan Cam TF