Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0920 ATGTCGTCTCCGGCTCCGACCTCCCCGCCGGCCACTAACACGACCTCACCCCCACCTCCCACCACCACCGCACCACCCCCAGCACCTCCGTCTCTCTCACCACCGCCGCCTCCCGACGCTTCCTCTCAGCCTCCACCTGCTTCATCTCCGCCGCCTTCCACCACTCCTTCGCCGCCCCCTCCGGACACTACCACTCCATCTCCGCCTACTTCTTCTCCTTCACCGCCAACCACGCCTTCGAGCTCTTCGCCGCCGCCGCCTCCTCCTCCTCCGTCTACCAACTCGACTGCTCCCCCGCAGCTGCCGAGTCCGACGCCGCCCTCGGCTTCTGGCACACCTGCGAGTCCCGGAGCAAATCTGTCTCCGCCGTCTTCCTCACCATCGTCCGGTAATTCTGCTGGACTTGTAGCTGGAGTTGCTGTTGCTGGAGTTGTGGTAGTGGTTGTGGCGTTGATTGTTATGTTTTTGTGTTTAAGAAAGAAGAGAAGACGCGACGAGGAGGCTTACTACCGGCCCCCCCCGCCCGCGGCGTTTAAAGATGGCCCATATGGTCCACAACAGCACCACTGGCAATCACATCCCCCGCCGCCGCCGCCGTCAGATCATTTCGTGGGGGCAGTGCTGAAGCCGTCTCCTCCGCCAGCATCACGGCCACCGCTCTCACCTCCGATTATAAACAGCAGTGGAGGCTCTGGATCTAATTATTCAGGGTCTGAAAATTCGCTTGCTCCTGCTCCATCTTCAATTCCCTTGGGCTTCTCACAAAGCAGCTTCACTTATGAAGAGTTAGCAATGGCGACAGATGGGTTTTCAGAAGCCAACCTCCTCGGACAAGGTGGGTTTGGTTATGTTCATAAAGGAGTACTTCCAAATGGAAAGGAAGTGGCAGTGAAGCAACTTAAAGCTGGAAGTGGACAGGGAGAGCGTGAATTTCAAGCAGAAGTGGAAATAATCAGCCGAGTTCATCATAGACATCTTGTTTCCTTAGTGGGATATTGCATTACTGGCTCCAAAAGATTGCTGGTTTATGAATTTGTTCCCAACAACACATTGGAGTTCCACTTGCATGGCAAAGGACGACCCACCATGGACTGGCCAACGAGACTGAAAATTGCTTTGGGATCTGCCAAGGGATTAGCCTACCTGCATGAGGACTGTAATCCTAAGATTATTCATCGTGACATCAAAGCAGCAAATATACTTTTGGATCTCAAATTCGAAGCAAAGGTTGCAGATTTTGGGCTTGCTAAGTTGTCTTCTGATGTTAATACTCATGTTTCAACCCGAGTCATGGGAACTTTTGGATACCTTGCTCCTGAATATGCTTCAAGTGGGAAACTCACTGAGAAATCAGATGTCTTCTCCTTTGGAGTGATGCTTTTGGAGATGATTACTGGACGCAGACCTGTAGATACAACTCAATCATTCATGGACGATGGATTGCTTGATTGGGCAAGGCCATTACTGTTACGGGCCACCGAAGATGGGGTGTATGACGGTCTAGTAGATCCAAAGCTGAGAGATAACTATGACCACAACGAGATGGCTCGCATGGTTGCTTGCGCGGCTGCCTGTGTGCGCCATTCAGCTAGGCGCCGACCACGGATGAGTCAAGTGGTTCATGCTCTTGAAGGTGAAGCCTCACTTTCTGATCTTAATGAAGGGATTCGACCTGGACATAGCTCTGTCTACAGTTCTTATGGAAGCTCTGACTACGACACAGCTCAGTACAATGAGGACCTGAAAAAGTTCAGGAAGATGGCGTTGGCGAGTCAGGAGTACGGCAGTGAGTACAGCGAGCCAACGAGTGAGTATGGTTTGTATCCATCTGGGTCAAGTGGCGATGGCCAAACAACCAGGGAAATGGAGATGAGAACGATGAAGAAAGAAAGTGGAGGTTTTAATGGAAGCTCATAA 1917 51.9 MSSPAPTSPPATNTTSPPPPTTTAPPPAPPSLSPPPPPDASSQPPPASSPPPSTTPSPPPPDTTTPSPPTSSPSPPTTPSSSSPPPPPPPPSTNSTAPPQLPSPTPPSASGTPASPGANLSPPSSSPSSGNSAGLVAGVAVAGVVVVVVALIVMFLCLRKKRRRDEEAYYRPPPPAAFKDGPYGPQQHHWQSHPPPPPPSDHFVGAVLKPSPPPASRPPLSPPIINSSGGSGSNYSGSENSLAPAPSSIPLGFSQSSFTYEELAMATDGFSEANLLGQGGFGYVHKGVLPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHRHLVSLVGYCITGSKRLLVYEFVPNNTLEFHLHGKGRPTMDWPTRLKIALGSAKGLAYLHEDCNPKIIHRDIKAANILLDLKFEAKVADFGLAKLSSDVNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLEMITGRRPVDTTQSFMDDGLLDWARPLLLRATEDGVYDGLVDPKLRDNYDHNEMARMVACAAACVRHSARRRPRMSQVVHALEGEASLSDLNEGIRPGHSSVYSSYGSSDYDTAQYNEDLKKFRKMALASQEYGSEYSEPTSEYGLYPSGSSGDGQTTREMEMRTMKKESGGFNGSS 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13690277 13692846 + CaPI482276_06g009200.1 Cam06g0920 129220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0920 638 MobiDBLite consensus disorder prediction 1 132 - -
Cam06g0920 638 Pfam Protein tyrosine and serine/threonine kinase 274 543 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam06g0920 638 MobiDBLite consensus disorder prediction 189 203 - -
Cam06g0920 638 PRINTS Proline rich extensin signature 4 20 - -
Cam06g0920 638 PRINTS Proline rich extensin signature 48 73 - -
Cam06g0920 638 PRINTS Proline rich extensin signature 26 43 - -
Cam06g0920 638 MobiDBLite consensus disorder prediction 166 241 - -
Cam06g0920 638 ProSitePatterns Protein kinases ATP-binding region signature. 276 298 IPR017441 GO:0005524(InterPro)
Cam06g0920 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 390 402 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam06g0920 638 FunFam proline-rich receptor-like protein kinase PERK1 248 345 - -
Cam06g0920 638 MobiDBLite consensus disorder prediction 1 111 - -
Cam06g0920 638 MobiDBLite consensus disorder prediction 112 132 - -
Cam06g0920 638 MobiDBLite consensus disorder prediction 222 241 - -
Cam06g0920 638 FunFam Proline-rich receptor-like protein kinase PERK1 346 554 - -
Cam06g0920 638 SMART serkin_6 270 519 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g0920 638 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 95 587 IPR047117 -
Cam06g0920 638 MobiDBLite consensus disorder prediction 595 620 - -
Cam06g0920 638 Gene3D Transferase(Phosphotransferase) domain 1 346 555 - -
Cam06g0920 638 SUPERFAMILY Protein kinase-like (PK-like) 245 543 IPR011009 -
Cam06g0920 638 MobiDBLite consensus disorder prediction 595 638 - -
Cam06g0920 638 Gene3D Phosphorylase Kinase; domain 1 245 345 - -
Cam06g0920 638 ProSiteProfiles Protein kinase domain profile. 270 549 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0420 Cam-Chr3:5226062 Cam06g0920 Cam-Chr6:13690277 8.20E-56 dispersed
Cam06g0920 Cam-Chr6:13690277 Cam11g0470 Cam-Chr11:6176088 4.40E-159 dispersed
Cam02g0226 Cam-Chr2:3169423 Cam06g0920 Cam-Chr6:13690277 3.20E-63 transposed
Cam11g0309 Cam-Chr11:4618815 Cam06g0920 Cam-Chr6:13690277 6.70E-198 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85258 PF07714 PK_Tyr_Ser-Thr 1.80E-46 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0920 - - - 0.0