Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0935 ATGGAATCAAAGTCTTCGTTCTACGGTTCAAGGAGGAACTTACATGTTTCAAGTTGGTTTAGTTTGAAGACCTGGGGAATTTCAGGTGGGGGTAGGGGCGGCCGCCTGTATTGGCATCATTCACAAATTGGGAGGCCCGGGTTCTCCCGGGTGGTTTTCTGTAATGATCCTGATTGTTTGGAGGCTGGAATGCGTAATTATGTTAATAATTCCATCAGGTCTACAAAGTATACACCCATCAATTTTTTGCCCAAGTCCTTGTTTGAGCAGTTTAGGAGGGTGGCTAATTTTTACTTCTTGATTGCTGGAATACTAGCCTTCACTCCTCTTGCTCCTTTTACTGCCGTCAGTGCAATTATCCCTCTTATTGCAGTCATTATCGCGACAATGGTTAAAGAAGGTATTGAAGATTGGCGACGACAGGCACAGGATATTGAGGTGAATAATAGAAAGGTTAAGGTTCATCAAGGCAATGGAGTCTTTGACCTTACTGAATGGAAAACTTTGAGGGTCGGAGATATAGTGAAGGTTGAAAAGGATCAATACTTTCCAGCCGACCTTCTTTTAATTTCATCATGCTATGAGGATGGAATCTGTTACGTAGAAACGATGAACCTTGATGGGGAAACAAATCTGAAGGTAAAGCAAGCATTGGATGCAACTGCATTTGCAAATGAGGATTCTAACTTCCGTGATTTTAAGGCTACAATCAAATGTGAAGACCCAAATGCAAATCTTTATACCTTTGTTGGAAGCATGGACTTTGAAGAGCAACAATATCCACTTTCTCCTCAAAATCTTCTCCTGAGGGACTCCAAACTCCGAAACACAGAATATATATACGGGGTTGTTGTCTTTACTGGTCAAGATTCAAAGGTTATTCAAAATTCTACTGATCCACCTTCCAAGAGAAGCAAAGTTGAGAAGAAGATGGATAAAATCATATATCTGCTGTTAAGCATTCTATTCGTGCTGGCATTTATTGGTTCTATAGTCTTTGGTGTCCTGACTAAAGATGATCTGAAAAATGGGAGGACAAAGAGATGGTATCTTAGACCAGATGATTCTACTATTTTCTTTGATCCCAATAATGCACCGGCTGCCGCAATTTTTCACTTTCTGACTGCACTGATGTTGTATAACTACTTTATCCCTATATCCTTGTATGTGTCTATTGAAATTGTCAAAGTTCTTCAGAGTATCTTCATCAATCAAGACATTCATATGTACTATGAAGAAGCTGACAAACCAGCACATGCCCGCACCTCCAATTTGAATGAGGAACTTGGTCAAGTTGACACTATACTCTCTGACAAGACTGGCACTTTGACCTGTAACTCAATGGAGTTTATCAAGTGTTCTGTGGCTGGAACAGCTTATGGCAGTGGTGTCGCTGAAACTGAGAGAGCTATGGAAGGCAGAAATAGTATGCCAATGCTTAATGGCAATGGCATTGGAAATATCCATAAGAGCAATGCGGATGCTTCAGATACAAATCCCTCTGTCAAAGGCTTTAATTTTAAGGACAAAAGGATTATGAATGGAAACTGGGTTAATGAACCTCATGCAGATGTCATTCAGAAGTTCTTCCGCCTCCTTGCAACTTGTCATACAGCTATTCCCGATGTGGATGAAAACACGGGAAAGGTTTCATATGAAGCTGAATCGCCAGATGAAGCAGCATTTGTAATTGCTGCCAGAGAAATTGGTTTTGAATTCTACCAGAGGACACAGACAAGTATATCTATTCGTGAATTGGATCCTAGGTCTGGAAGGAAGGTCAAAAGGTCATATAAGCTTTTAAATGTTTTGGAGTTTAATAGCGCCCGAAAGAGGATGTCTGTCATAATTAGAGATGAAGAAGGGAAAGTGCTATTACTATGCAAAGGTGCTGACAGCGTCATGTTTGAGAGGCTTGCGAAGAATGCTAGAGAATTTGAAGAGAAAACGAAGGAGCATATCAATGAATATGCCGATGCAGGCCTACGGACCTTGTTACTTGCTTATCGTGAACTTGATGAGGAGGAATACAAGGAATTTGATAGGAAATTCTATGAAGCAAAGAATTCAGTTAGTGCAGAGAGGGAGGCAATGATTGATAAAGTAACAGATCACATTGAGAGGAACTTAATTCTTCTTGGTTCCACAGCAGTTGAGGACAAGCTTCAAAATGGGGTCCCTGAATGCATAGACAAACTTGCTCAAGCTGGGATTAAGATCTGGGTTTTGACTGGGGACAAGATGGAGACTGCGATCAATATTGGTTTTGCCTGTAGTTTGCTGAGACAAGGAATGAAACAGATCATTATATCTCTGGAGACACCAGAAATTCAAGCCTTAGAAAGGACGGGAGAGAAGGATATGATCACTAAGGCATCAAAAGAAAGTATCGTCCACAAGATAAATCGGGCAAGATCTCAGATCACTGCATCAACTGGAAGCTCTGAGGCTTATGCATTGATAATTGATGGGAAATCACTTACTTATGCTCTAGAGGATGATGTGAAGGATGCATTCCTTGACCTTGCAATTGGATGTGCGTCTGTTATTTGTTGTCGCTCATCTCCAAAGCAAAAGGCAATGGTCACTAAGTTGGTTAAACTTGCAACGGGGAAAACAACATTAGCAATTGGTGATGGTGCAAATGATGTTGGAATGCTTCAAGAAGCAGATATTGGAGTTGGAATCAGTGGTGCCGAAGGGATGCAGGCAGTCATGTCGAGTGATATTGCAATTGCTCAGTTCAGATATTTGGAGCGTCTTCTGCTTGTGCATGGACATTGGTGTTACAGGAGATTATCATCAATGATTTGCTACTTTTTCTACAAGAATTTCACATTTGGTTTTACGCTTTTCTTATATGAGGCATACACTTCGTTCTCTGGACAACCTGCATATAACGACTGGTTTATGTCACTCTACAACGTTGTGTTCTCGTCTCTGCCAGTTGTGGCCCTCGGGGTGTTTGACCAAGACGTGTCTGCAAGATACTGCCTTAAGTTTCCTATGTTGTACCAACAAGGTGTGCAGAACGTCCTCTTCAGCTGGGTTAGGATACTTGGCTGGATGTTTAATGGTCTTTGTAGTGCAGTGATCATTTTCTTTTTCTGCACAAGTGGAATGCAGCATCAAGCATTTAATTCCGAGGGGAAAACCGTGGGGAGGGATATTCTAGGAGCGACGATGCTGTCATGTGTTGTTTGGGTTGTCAACTTGCAGATGGCTCTCTCTGTTAGCTACTTCACTTTAGTACAGCATATTTTCATCTGGGCTTCGATCTTTATTTGGTACCTTTTTCTGATGATATATGGAGCCTTTCCTGCCAGCATTTCGACAACTGCATATCGCGTGTTCCTCGAAGCCCTTGCTCCTGCCGGGTCTTATTGGCTTCTGCTGATATTTGTGGTGATCTCTACTCTCATTCCATTCTTTGTATACTCAGCATTACAGTTGAATTTCTTTCCCATGTACCATGAAAAAATACAGTGGATAAGACACGATGGTCAGGGGAAGATAGATGATCCCGAGTTTGTCAATATGGTCAGGCAAAGCTCATTGAGACCAACAACTGTGGGCTTCACTGCTCGTTTGGCAGCCAAAATAAGAAGAGAAAAATCATAG 3621 41.56 MESKSSFYGSRRNLHVSSWFSLKTWGISGGGRGGRLYWHHSQIGRPGFSRVVFCNDPDCLEAGMRNYVNNSIRSTKYTPINFLPKSLFEQFRRVANFYFLIAGILAFTPLAPFTAVSAIIPLIAVIIATMVKEGIEDWRRQAQDIEVNNRKVKVHQGNGVFDLTEWKTLRVGDIVKVEKDQYFPADLLLISSCYEDGICYVETMNLDGETNLKVKQALDATAFANEDSNFRDFKATIKCEDPNANLYTFVGSMDFEEQQYPLSPQNLLLRDSKLRNTEYIYGVVVFTGQDSKVIQNSTDPPSKRSKVEKKMDKIIYLLLSILFVLAFIGSIVFGVLTKDDLKNGRTKRWYLRPDDSTIFFDPNNAPAAAIFHFLTALMLYNYFIPISLYVSIEIVKVLQSIFINQDIHMYYEEADKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGSGVAETERAMEGRNSMPMLNGNGIGNIHKSNADASDTNPSVKGFNFKDKRIMNGNWVNEPHADVIQKFFRLLATCHTAIPDVDENTGKVSYEAESPDEAAFVIAAREIGFEFYQRTQTSISIRELDPRSGRKVKRSYKLLNVLEFNSARKRMSVIIRDEEGKVLLLCKGADSVMFERLAKNAREFEEKTKEHINEYADAGLRTLLLAYRELDEEEYKEFDRKFYEAKNSVSAEREAMIDKVTDHIERNLILLGSTAVEDKLQNGVPECIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMKQIIISLETPEIQALERTGEKDMITKASKESIVHKINRARSQITASTGSSEAYALIIDGKSLTYALEDDVKDAFLDLAIGCASVICCRSSPKQKAMVTKLVKLATGKTTLAIGDGANDVGMLQEADIGVGISGAEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRLSSMICYFFYKNFTFGFTLFLYEAYTSFSGQPAYNDWFMSLYNVVFSSLPVVALGVFDQDVSARYCLKFPMLYQQGVQNVLFSWVRILGWMFNGLCSAVIIFFFCTSGMQHQAFNSEGKTVGRDILGATMLSCVVWVVNLQMALSVSYFTLVQHIFIWASIFIWYLFLMIYGAFPASISTTAYRVFLEALAPAGSYWLLLIFVVISTLIPFFVYSALQLNFFPMYHEKIQWIRHDGQGKIDDPEFVNMVRQSSLRPTTVGFTARLAAKIRREKS 1206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 14042056 14049652 + CaPI482276_06g009350.1 Cam06g0935 129235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0935 1206 NCBIfam phospholipid-translocating P-type ATPase 67 1162 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Cam06g0935 1206 Gene3D - 124 298 - -
Cam06g0935 1206 Gene3D - 709 917 IPR023214 -
Cam06g0935 1206 Pfam Phospholipid-translocating ATPase N-terminal 52 119 IPR032631 -
Cam06g0935 1206 NCBIfam HAD-IC family P-type ATPase 843 959 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cam06g0935 1206 SFLD C1.7: P-type atpase like 418 928 - -
Cam06g0935 1206 Gene3D - 560 687 IPR023299 GO:0000166(InterPro)
Cam06g0935 1206 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 44 1162 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Cam06g0935 1206 Coils Coil 636 656 - -
Cam06g0935 1206 FunFam Phospholipid-transporting ATPase 128 298 - -
Cam06g0935 1206 SFLD p-type atpase 418 928 IPR044492 -
Cam06g0935 1206 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 512 684 IPR023299 GO:0000166(InterPro)
Cam06g0935 1206 CDD P-type_ATPase_APLT_Dnf-like 69 1037 - -
Cam06g0935 1206 SUPERFAMILY Calcium ATPase, transduction domain A 151 295 IPR008250 -
Cam06g0935 1206 Pfam Phospholipid-translocating P-type ATPase C-terminal 905 1155 IPR032630 -
Cam06g0935 1206 SUPERFAMILY Calcium ATPase, transmembrane domain M 66 1154 IPR023298 -
Cam06g0935 1206 ProSitePatterns E1-E2 ATPases phosphorylation site. 438 444 IPR018303 -
Cam06g0935 1206 FunFam Phospholipid-transporting ATPase 713 917 - -
Cam06g0935 1206 SUPERFAMILY HAD-like 431 932 IPR036412 -
Cam06g0935 1206 FunFam Phospholipid-transporting ATPase 555 713 - -
Cam06g0935 1206 PRINTS P-type cation-transporting ATPase superfamily signature 877 896 - -
Cam06g0935 1206 PRINTS P-type cation-transporting ATPase superfamily signature 436 450 - -
Cam06g0935 1206 Pfam Cation transport ATPase (P-type) 535 639 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1173 Cam-Chr4:25789838 Cam06g0935 Cam-Chr6:14042056 0.00E+00 dispersed
Cam05g2681 Cam-Chr5:34213421 Cam06g0935 Cam-Chr6:14042056 5.50E-271 dispersed
Cam06g0935 Cam-Chr6:14042056 Cam09g0073 Cam-Chr9:1579712 0.00E+00 dispersed
Cam06g0935 Cam-Chr6:14042056 Cam05g2520 Cam-Chr5:33046188 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0935 K01530 - csv:101205800 2236.45