Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0968 ATGATCCGGTTAAGTTTGATTGTTTTTTTCCTCTTTTCTGTGTTATTTGTTGTTGAAGCTCAAATTGATTCTCAAGATCCTGAAAATGCTGCTTTTCAACCAAGTCTTGGCTTTGTGATAGGGATTTTGGGAGTTATGTTTTTGTTGACATTTATTCTTCTTGTCTATGCAAAGTTCTGCCATAGAAGATCTTCTGTTCGTGGGGATGATGTAAATCTTCCTAGACAAATCAGGTCAAGTTCTCGGCTTTCTGGAGTCGATAAGACGGTGATCGAGTCTCTTCCATTCTTTAGATTCTCCACATTGAAAGGGTCCAAAGAAGGGCTGGAATGTGCAGTCTGTCTTTCGAAATTTGAAGATATCGAAATTCTCCGGTTGTTGCCGAAGTGCAAACATGCATTTCATATTAACTGCATTGATCATTGGCTCGAAAAACATGCTAGCTGTCCTCTTTGCAGGCAAAGAGTTGGCTCTGAGGACTTGAAGCTCCTTGCTACTTCAAACAGCATGAGGTTCTTATTGAGCAACTTATCAGAGCTAAAACAAGACTCAAACATAGAGCTCTTTGTACAAAGAGAAGAAGAAGAACAACGACAAATACTCCATGGCTCTTCTAGATTCAGCATTGGAAGAAGCTTCAGAAAGATCTTAAGGAGTGATAAGGAAGAGGAAATGTTGATACAAAAGGCTTGTGGTGATGGAGATGAGGACATGAAGAACTTACACAGACACAACCACAAAATTATCGTATCCGATTTCGTTTTCATGAATCGATGGAGCAACGTAAGTTCGTCAGACCTGATGTTCTTGAACAAAGAGATGATGGATGCCATTTCAAGCAGTAGATTCACTTCCTTGGAAACAGATATAGAACAGTCAACGAAGCCAAGATCAATACAAATTGAAGAAATTTTGAAGATCAAGGAGGAGATGGAAGTAAAGAGATCATTTGAGAGCAAACTCAACACAATAAACCAAAGCAACTCAGTTCTGGGATTCCCTTCTACATCACAATCTGCTGCAAATCCAAGTCAAACAACAAGAATTACAAGCCCAGAGGCAAGAAGATCAGTTTCAGAAATCACAGGCATATCAAGATTTGGTAACGAAGATCTGTATATGAATTTTAACAGAAAAGTTGAAACTGGGGAATCTTCTGATCTGGGAAACAATGTAAAGCAAGAAAGAGTGAGACAAATTTGGTACCCAATTGCTAAAAGAACAGTCCAATGGTTTGCCAATAGAGAAACAAGGTTTCAAACAGCTGACAACAGACAACAAACAGTAGAAAATGTATAA 1299 38.65 MIRLSLIVFFLFSVLFVVEAQIDSQDPENAAFQPSLGFVIGILGVMFLLTFILLVYAKFCHRRSSVRGDDVNLPRQIRSSSRLSGVDKTVIESLPFFRFSTLKGSKEGLECAVCLSKFEDIEILRLLPKCKHAFHINCIDHWLEKHASCPLCRQRVGSEDLKLLATSNSMRFLLSNLSELKQDSNIELFVQREEEEQRQILHGSSRFSIGRSFRKILRSDKEEEMLIQKACGDGDEDMKNLHRHNHKIIVSDFVFMNRWSNVSSSDLMFLNKEMMDAISSSRFTSLETDIEQSTKPRSIQIEEILKIKEEMEVKRSFESKLNTINQSNSVLGFPSTSQSAANPSQTTRITSPEARRSVSEITGISRFGNEDLYMNFNRKVETGESSDLGNNVKQERVRQIWYPIAKRTVQWFANRETRFQTADNRQQTVENV 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 14694015 14695313 - CaPI482276_06g009680.1 Cam06g0968 129268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0968 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 161 IPR013083 -
Cam06g0968 432 FunFam RING-H2 finger protein ATL43 86 160 - -
Cam06g0968 432 Pfam Ring finger domain 110 153 IPR001841 -
Cam06g0968 432 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Cam06g0968 432 MobiDBLite consensus disorder prediction 332 355 - -
Cam06g0968 432 SMART ring_2 111 152 IPR001841 -
Cam06g0968 432 CDD RING-H2_EL5-like 110 153 - -
Cam06g0968 432 SUPERFAMILY RING/U-box 91 157 - -
Cam06g0968 432 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 23 416 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0968 Cam-Chr6:14694015 Cam06g1537 Cam-Chr6:26819524 1.80E-42 dispersed
Cam06g0968 Cam-Chr6:14694015 Cam06g0969 Cam-Chr6:14696556 4.60E-107 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0968 K10664 - csv:105436309 520.39