Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0978 ATGGAGACTGAGTCTAGAATTTTAAACCCATCTCCTCCGCCGTCGCCGTCATCATCTGGAAGTTTATCCACGGTTCCCGATCATCACCCGTCGTCGTCGTCGTCGTCGGCGGTCGAGTCGAACCGGAAACGAGCGAAACGGCCGAGAGAAAATAACAACAACAATAGTAAACACCCGGTTTTCCGTGGGGTCCGAATGAGGGCTTGGGGAAAGTGGGTTTCCGAAATTCGTGAACCCCGAAAAAAAAGCCGGATCTGGCTCGGCACTTTCTCCACCCCTGAAATGGCCGCACGTGCTCACGACGTCGCCGCCCTCACCATTAAAGGCACCGCCGCCATTCTCAACTTCCCTGAACTCGCCCATCACTTCCCCCGCCCCGCCTCCTCCTCCCCCCGCGACGTTCAGGCCGCCGCCGCCAAAGCCGCCGCCATGGAAATCCCAACTCCCTCACTTTCTTCCTCTTCCTCCTCCGCCTCCTCCTCCTCCTCTTCCTCCTCCGCCTTGTGTCCATCCTCGCCGGAGGAACTGAGTGAAATCCTGGAACTCCCGAGTTTAGGAACGAGTTACGAAACAGCCGAGTTAGGAAACGAGTTCGTATTCGTGGACTCAGTGGAAGGCTGGCTTTATTCTTACCCATGGTATAACAGAGTCAATAATGCAGATCACCAAGTACAAGAGGATTATGGATTCTTCAAAGAACAGATTTTAATGGCGGATTATACAGACACTTTAATTCCATCTTCAACGTTCGAAGCTTTCTTATGGCAAAATTAA 774 52.84 METESRILNPSPPPSPSSSGSLSTVPDHHPSSSSSSAVESNRKRAKRPRENNNNNSKHPVFRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALTIKGTAAILNFPELAHHFPRPASSSPRDVQAAAAKAAAMEIPTPSLSSSSSSASSSSSSSSALCPSSPEELSEILELPSLGTSYETAELGNEFVFVDSVEGWLYSYPWYNRVNNADHQVQEDYGFFKEQILMADYTDTLIPSSTFEAFLWQN 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 14925412 14926185 + CaPI482276_06g009780.1 Cam06g0978 129278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0978 257 CDD AP2 61 119 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g0978 257 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g0978 257 PRINTS Ethylene responsive element binding protein signature 83 99 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g0978 257 SUPERFAMILY DNA-binding domain 60 118 IPR016177 GO:0003677(InterPro)
Cam06g0978 257 FunFam Ethylene-responsive transcription factor 2 59 118 - -
Cam06g0978 257 Gene3D AP2/ERF domain 60 118 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g0978 257 MobiDBLite consensus disorder prediction 124 171 - -
Cam06g0978 257 MobiDBLite consensus disorder prediction 147 171 - -
Cam06g0978 257 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 43 202 IPR051032 -
Cam06g0978 257 SMART rav1_2 60 123 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g0978 257 MobiDBLite consensus disorder prediction 20 39 - -
Cam06g0978 257 MobiDBLite consensus disorder prediction 1 62 - -
Cam06g0978 257 Pfam AP2 domain 59 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g0978 257 ProSiteProfiles AP2/ERF domain profile. 60 117 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0978 Cam-Chr6:14925412 Cam11g0326 Cam-Chr11:4794562 9.80E-49 dispersed
Cam06g0978 Cam-Chr6:14925412 Cam11g1537 Cam-Chr11:28196751 9.80E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52139 PF00847 AP2 3.00E-13 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0978 K09286 - csv:101219745 346.28