Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0998 ATGGGCAAAACCGATTCAATCAATGGTTTCTCTGATCTTGTTCAACATCCAGATTTCTCCCACTATGTTGAAATTGATCCCACTGGCAGATATGGAAGATACAATGAAATCCTCGGCAAAGGAGCTTCCAAGACAGTTTACAGAGCATTTGACGAGTATGAAGGGATTGAAGTTGCTTGGAACCAGGTCAAACTCTGTAACTTCCTTCAATGCCCTGAAGATCTTGAGAGGCTATACTCTGAGATTCATCTCTTGAAAACATTGAAACATAAGAACATTATGAAATTCTATACTTCTTGGGTCGATACTGCAAATAAGAACATCAACTTTGTAACTGAAATGTTCACTTCTGGGACTTTGAGGCAGTATAGGCTAAAGCATAGGAGAGTTAACATTAGAGCAGTGAAGAGATGGTGTAGACAAATTTTGAGGGGTCTTCACTATCTCCATAGCCAAGACCCCCCTGTGATCCACAGAGATCTCAAGTGTGACAACATTTTTGTTAATGGTAACCAAGGAGAAATTAAAATTGGAGACCTTGGTCTTGCTGCTATCCTCCGGAAATCACATGCTGATCATTGTGTCGGGACACCAGAATTCATGGCTCCTGAAGTATATGAAGAGGCATATAATGAATTGGTAGACATTTATTCTTTTGGGATGTGTGTTTTGGAGATGGTTACGTTTGAATATCCATATAGTGAATGTAATCATCCTGTTCAAATCTATAAGAAAGTAATTTCTGGGAAAAAACCAGCTGCCTTGTATAAAGTGAAGGATCCGAGCATGCGTCAATTCGTCGAGAAATGCTTGGCCCCAGTCTCTTGTAGACTTTCAGCAAGGGAGCTTTTGAGTGACCCTTTTCTCCAAATTGATGATTGTGAAAGCAAGCCAAAAATTTCAGATTCTCGGGGAGAACTGGACGATTTTGCTTCCACAGCACACCCTTTCCTTGAACAAGAAAAAATATTTAACTCAATTAGTTACAGTATAGAGGCCTCAGATGCATGGAGGTGCCGTACAGTTCAGAAGGAACCGGATGGGATTGAACTTTTTGAGGGCAATGATAATGACCAATTGGAAAATCTTGATAACAGTATTAAGGGGAAGATAAGAGAAGATGGCAATATTGTTTTAAGACTTAGGATTGCAGATAAAGACGGACATATTCGGAACATATATTTCCCATTTGACACCAAGAATGATACAGCATTAACAGTAGCCACCGAAATGATAGCAGAACTTGATATTACTGACCAAGATGTGATCAAGATAGCTGAAAAAATTGATGGGGAAATTGCTTCCTTGGTACTCGACTGGAAGCCAGGGCCTGCCATTGACGAAACACCCCGTATCTCTTACGATGGTGGCTCTCAAAGCTATAACGTCTCTAATCAACCATCTGTTAATTCTTTAACAGAGAGTAAGCAAAATGGACCAAAACTCTATCAGATTTTAAACTGCAGCACAGAGCAGTTCTTCCTCAAAGCAGATCAGCCTACACAGTCTGTAGTAGAGAGCATACCAAAAGTGTCAAGCCAGCACTATCAGTCAAACTCTGTCCTCCATGAAAACCAAGCTCCTAGTTCTCATAGTCTTAGGCAAAGACATTCTGATGAAAATTACAAGAAAACTGACCAATCAGTTGGATATAACAAAGAAAAAGTACCAGATAACAAAGCCACTGTCATTGATAGAACTTCACTAAGAAGCTTATTGGGTTCCCGATCGCTGTCCACGGTTCCATCCTATTGTGAAGATAAATTTCCCTCTCAAATCCATTGGGAAATTAGATGGCTATGGAATTGA 1809 40.02 MGKTDSINGFSDLVQHPDFSHYVEIDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLCNFLQCPEDLERLYSEIHLLKTLKHKNIMKFYTSWVDTANKNINFVTEMFTSGTLRQYRLKHRRVNIRAVKRWCRQILRGLHYLHSQDPPVIHRDLKCDNIFVNGNQGEIKIGDLGLAAILRKSHADHCVGTPEFMAPEVYEEAYNELVDIYSFGMCVLEMVTFEYPYSECNHPVQIYKKVISGKKPAALYKVKDPSMRQFVEKCLAPVSCRLSARELLSDPFLQIDDCESKPKISDSRGELDDFASTAHPFLEQEKIFNSISYSIEASDAWRCRTVQKEPDGIELFEGNDNDQLENLDNSIKGKIREDGNIVLRLRIADKDGHIRNIYFPFDTKNDTALTVATEMIAELDITDQDVIKIAEKIDGEIASLVLDWKPGPAIDETPRISYDGGSQSYNVSNQPSVNSLTESKQNGPKLYQILNCSTEQFFLKADQPTQSVVESIPKVSSQHYQSNSVLHENQAPSSHSLRQRHSDENYKKTDQSVGYNKEKVPDNKATVIDRTSLRSLLGSRSLSTVPSYCEDKFPSQIHWEIRWLWN 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15480120 15482811 - CaPI482276_06g009980.1 Cam06g0998 129298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0998 602 MobiDBLite consensus disorder prediction 515 532 - -
Cam06g0998 602 Gene3D - 375 439 - -
Cam06g0998 602 ProSiteProfiles Protein kinase domain profile. 32 289 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g0998 602 SMART serkin_6 32 289 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g0998 602 FunFam probable serine/threonine-protein kinase WNK9 115 294 - -
Cam06g0998 602 CDD STKc_WNK 30 289 - -
Cam06g0998 602 MobiDBLite consensus disorder prediction 515 555 - -
Cam06g0998 602 Pfam Protein kinase domain 35 289 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g0998 602 Gene3D Transferase(Phosphotransferase) domain 1 115 294 - -
Cam06g0998 602 SUPERFAMILY Protein kinase-like (PK-like) 35 290 IPR011009 -
Cam06g0998 602 Gene3D Phosphorylase Kinase; domain 1 18 113 - -
Cam06g0998 602 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam06g0998 602 FunFam Probable serine/threonine-protein kinase WNK1 17 113 - -
Cam06g0998 602 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 377 433 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Cam06g0998 602 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 21 548 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Cam06g0998 602 MobiDBLite consensus disorder prediction 533 555 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0648 Cam-Chr4:20508927 Cam06g0998 Cam-Chr6:15480120 1.70E-115 dispersed
Cam05g0077 Cam-Chr5:1172140 Cam06g0998 Cam-Chr6:15480120 2.30E-126 dispersed
Cam06g0620 Cam-Chr6:8446147 Cam06g0998 Cam-Chr6:15480120 7.90E-184 dispersed
Cam06g0998 Cam-Chr6:15480120 Cam10g0432 Cam-Chr10:6692502 8.90E-101 dispersed
Cam06g0998 Cam-Chr6:15480120 Cam02g1702 Cam-Chr2:30052736 4.30E-204 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85259 PF00069 Pkinase 9.20E-50 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0998 K08867 - csv:101222641 1052.74