Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1067 ATGAACATGGCCAATTCAGGTGCAGCTCCTCCTCAGGCCGATTATTTGATAAAGGAAGAGGCCCGGTATCTGTGTGCTGCAATGGGGCATGAAAATGAATCCTTAGATGAATTTGTGGAAGCGCACAAAACCTGCTTGAATGATCTTATGTACTTCCCCACTAGGAATGCTTATGGACTTTCGAGCGTTGCTGGAAACCATGAGAAACTAGCGGCCTTGCAGGATGAATTTGAGTATGTTAAAAAGAAAATGGATGATGATACTGAGAAGGCTGTCCGGTTGGAGAAGAAGGTTAAAGTTCTCACACATGGCTATGAGACACGGTCAAAACAAAGCCTTTGGCCGCAAATTGAGGCAACTTTCAAGCAGATAGACACTGCAGCAACAGAGCTGGAGTGCTTTGAAGCTCTTCAAAAACAAGAGATATCAGCTGCTTCACACAGAATTAGTGGTATCTGGGAAGAGGTTCAAAAACAAAAAGAGCTGGAGAGAACTCTGCAGCTGCGTTATGGAAATCTTTTGGGGGACTTGGAAAAGATGCAGAAAATCATGGTTGATCTCAAAGCACAGGCACAAAAGGAAGAAGAAATCGCAGCGCAGAGCCGTGCTCTTCAGTTGGCTGAGGCTGAGGTTGAGGCTGATCAAACCGTTGGAGAAAATGCTGATAGTTCTGAAGCCATGTCTGCATCAGTAGCAGTTGATTGTGAAAATTCTGTGCCTGTTACCTCAACCTCCAATGAATTAACAGGTGAACAACTGAACTCGTCTGTGGGACATGAACATGAAACTTCTAATGCCATGGATATCGACACAGAAAAAGAAAGTGTACCGGTGAGCTTGGATATTGGTTTATCTGATAACAAACTACCCTCTACAGTGGGAGAGAATGCATCATTGCCTGACAATGGCTTTGAAGATTATGATAAAAGTCAAACCACTGATGTTCCCTCTCAAGAACTCTCGGGTCCTGTTACAAATGGCACTCCAGATGTGACTGTTACAGTGGAAAATAACATCAGCAATGATTCGGTTGATGGTAAAGCTATTGAAAATGTTAAATGTAGGACCGATATCGTCGAGGAAGTCAAAGATGCTGAAACTCAACAGTCTGTGACCGAAACTGAAAATAACTCAGATGTGCATTTGACTAATCTGGATTCTGCTGCACCGGCATCTTCTAATGAGGGTAACGGGGAACTCCCTAGTGGCGAAGGGGAAGCAATGGAATCAAATGTCTAG 1239 43.74 MNMANSGAAPPQADYLIKEEARYLCAAMGHENESLDEFVEAHKTCLNDLMYFPTRNAYGLSSVAGNHEKLAALQDEFEYVKKKMDDDTEKAVRLEKKVKVLTHGYETRSKQSLWPQIEATFKQIDTAATELECFEALQKQEISAASHRISGIWEEVQKQKELERTLQLRYGNLLGDLEKMQKIMVDLKAQAQKEEEIAAQSRALQLAEAEVEADQTVGENADSSEAMSASVAVDCENSVPVTSTSNELTGEQLNSSVGHEHETSNAMDIDTEKESVPVSLDIGLSDNKLPSTVGENASLPDNGFEDYDKSQTTDVPSQELSGPVTNGTPDVTVTVENNISNDSVDGKAIENVKCRTDIVEEVKDAETQQSVTETENNSDVHLTNLDSAAPASSNEGNGELPSGEGEAMESNV 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 17358085 17362283 - CaPI482276_06g010670.1 Cam06g1067 129367

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1067 412 MobiDBLite consensus disorder prediction 369 399 - -
Cam06g1067 412 MobiDBLite consensus disorder prediction 239 262 - -
Cam06g1067 412 MobiDBLite consensus disorder prediction 239 329 - -
Cam06g1067 412 MobiDBLite consensus disorder prediction 364 412 - -
Cam06g1067 412 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 12 184 IPR047242 GO:0000398(InterPro)|GO:0000398(PANTHER)|GO:0000974(PANTHER)|GO:0000974(InterPro)|GO:0005681(PANTHER)
Cam06g1067 412 Coils Coil 177 210 - -
Cam06g1067 412 MobiDBLite consensus disorder prediction 305 329 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1067 K12860 - - csv:101206265 585.104
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam06g1071 . 1 634 MYB-Related Transcription Factor Family AT1G09770 83.6 9.3e-298 1019.6
Cam06g1067 . 12 230 MYB-Related Transcription Factor Family AT1G09770 53.0 1.2e-50 198.7
Cam10g0698 . 187 639 MYB-Related Transcription Factor Family AT3G18100 57.8 4.1e-150 528.9
Cam10g0698 . 187 639 MYB-Related Transcription Factor Family AT3G18100 57.8 4.1e-150 528.9
Cam06g1071 . 1 634 MYB-Related Transcription Factor Family AT1G09770 83.6 9.3e-298 1019.6
Cam06g1067 . 12 230 MYB-Related Transcription Factor Family AT1G09770 53.0 1.2e-50 198.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49