Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1071 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACCGAAGATGAGATCCTTAAAGCCGCGGTTATGAAATATGGCAAAAACCAATGGGCTCGAATTTCGTCGCTTCTTGTCCGGAAATCTGCTAAGCAGTGCAAGGCTCGCTGGTATGAGTGGCTTGACCCCTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTCGGGCGTACTCCATCCCAGTGTCTCGAGCGGTATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGACAATTACGAACCAGGAGATGACCCAAGAAAATTGCGCCCTGGAGAAATTGACCCAAACCCAGAGTCAAAGCCTGCACGTCCTGACCCTGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGGTTAGCAAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCCAGAGAGAAACAACTTGAAGAGGCCAGGAGGCTTGCTTCGCTACAAAAAAGGAGAGAGCTAAAAGCTGCAGGGATTGATACTCGACAACGGAAGAGAAAGAGAAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAAAGGCCTCCTCCAGGATTTTTTGATGTTAGTGAGGAAGATAGACCAGTGGAACAGCCCAAATTTCCAACAACAATTGAAGAACTAGAAGGCAAAAGAAGGGTTGATGTAGAGGCTCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGACAAGATGCTCCATCAGCTGTACTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGAGGAAAAGATCTAAACTTATGCTGCCTGCACCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAAATGGGATATGCAAGTGATCTTCTAGCTGGTAATGAAGAGCTTGCAGAGGGAAGTGGTGCTACACGAGCTCTGCTTGCAAATTATGCACAGACACCACGACAAGGAATGACACCTTTTCGAACTCCCCAAAGGACGCCGGCTGGTAAGGGTGATGCTATAATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACTCCATTATTGGGAGGAGAGAATCCGGAGCTGCATCCTTCAGACTTTTCCGGGGTCACCCCAAGGAAAAAGGAGATTCAAACACCAAATCCTATGTTAACGCCCTCAGCAACTCCTGGTGGTGTTGGTCTCACTCCTCGAAGTGGCATGACACCAGCTAGGGATGCTTACTCATTTGGAATGACTCCAAAAGGAACGCCTATTAGAGATGAGTTACGTATCAATGAAGATATGGACGCACATGATAGTGCAAAACTTGAGTCTCAAAGACAAGCTGATTTGAGAAGGAATCTTAGCCTAGGATTAGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGACAAAGAAGAACCTGAGGAGATGATTGAAGAGGACATGTCTGACAGGATTGCTAGAGAACGAGCTGAGGAAGAAGCAAGGCGGCAGGCTTTGCTTAGGAAAAGATCAAAAGTACTACAAAGGGAGCTTCCTCGGCCTCCTACTGCTTCTTTGGAACTTATTAGAAATTCTTTGATGAGAGCTGATGGAGACAAGAGCTCATTTGTTCCGCCTACCCCTATTGAGCAGGCTGATGAAATGATAAGAAAGGAACTTCTTGCTTTGTTAGAGCATGATAATGCAAAGTACCCAATTGATGAAAAGGCTAGCAAGGAGAGAAAGAAAGGTTCAAAGCGCACTGGAAATGGACCTACTGCAGTCATCCCCACAATAGATGATTTTGAAGAAACTGTGATGGAAGAGCCACTAGTGGTAGCTGACGGTCTTTGCTCTTCTTTTATTATTTTTGCCCAAGTATATCTAATAAGTTCTATGAAGGCAGTAGTTTCTATTAGAACTGCTGAGGCTGGGCTGGTTTGGATGGTAGGGTGTCGTTGA 2037 44.48 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKRPPPGFFDVSEEDRPVEQPKFPTTIEELEGKRRVDVEAQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLAGNEELAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDELRINEDMDAHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARRQALLRKRSKVLQRELPRPPTASLELIRNSLMRADGDKSSFVPPTPIEQADEMIRKELLALLEHDNAKYPIDEKASKERKKGSKRTGNGPTAVIPTIDDFEETVMEEPLVVADGLCSSFIIFAQVYLISSMKAVVSIRTAEAGLVWMVGCR 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 17372716 17375310 - CaPI482276_06g010710.1 Cam06g1071 129371

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1071 678 MobiDBLite consensus disorder prediction 382 421 - -
Cam06g1071 678 MobiDBLite consensus disorder prediction 597 620 - -
Cam06g1071 678 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Cam06g1071 678 Coils Coil 167 187 - -
Cam06g1071 678 FunFam CDC5 cell division cycle 5-like 5 59 - -
Cam06g1071 678 Gene3D - 5 58 - -
Cam06g1071 678 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Cam06g1071 678 MobiDBLite consensus disorder prediction 597 612 - -
Cam06g1071 678 MobiDBLite consensus disorder prediction 213 234 - -
Cam06g1071 678 MobiDBLite consensus disorder prediction 157 176 - -
Cam06g1071 678 SMART sant 58 105 IPR001005 -
Cam06g1071 678 SMART sant 6 55 IPR001005 -
Cam06g1071 678 MobiDBLite consensus disorder prediction 400 414 - -
Cam06g1071 678 Pfam Myb-like DNA-binding domain 10 70 - -
Cam06g1071 678 CDD SANT 10 53 IPR001005 -
Cam06g1071 678 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Cam06g1071 678 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Cam06g1071 678 Pfam pre-mRNA splicing factor component 407 633 IPR021786 -
Cam06g1071 678 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Cam06g1071 678 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 634 IPR047242 GO:0000398(InterPro)|GO:0000398(PANTHER)|GO:0000974(PANTHER)|GO:0000974(InterPro)|GO:0005681(PANTHER)
Cam06g1071 678 Gene3D - 59 114 - -
Cam06g1071 678 CDD SANT_CDC5_II 55 106 IPR047240 -
Cam06g1071 678 FunFam CDC5 cell division cycle 5-like 60 120 - -
Cam06g1071 678 Coils Coil 514 534 - -
Cam06g1071 678 MobiDBLite consensus disorder prediction 110 150 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1071 K12860 - - csv:101205030 1197.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1071 Cam-Chr6:17372716 Cam10g0698 Cam-Chr10:11238789 1.30E-10 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam06g1071 . 1 634 MYB-Related Transcription Factor Family AT1G09770 83.6 9.3e-298 1019.6
Cam06g1067 . 12 230 MYB-Related Transcription Factor Family AT1G09770 53.0 1.2e-50 198.7
Cam10g0698 . 187 639 MYB-Related Transcription Factor Family AT3G18100 57.8 4.1e-150 528.9
Cam10g0698 . 187 639 MYB-Related Transcription Factor Family AT3G18100 57.8 4.1e-150 528.9
Cam06g1071 . 1 634 MYB-Related Transcription Factor Family AT1G09770 83.6 9.3e-298 1019.6
Cam06g1067 . 12 230 MYB-Related Transcription Factor Family AT1G09770 53.0 1.2e-50 198.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52142 PF11831 Myb_Cef 2.60E-51 No_clan Cam TF