Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1071 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACCGAAGATGAGATCCTTAAAGCCGCGGTTATGAAATATGGCAAAAACCAATGGGCTCGAATTTCGTCGCTTCTTGTCCGGAAATCTGCTAAGCAGTGCAAGGCTCGCTGGTATGAGTGGCTTGACCCCTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTCGGGCGTACTCCATCCCAGTGTCTCGAGCGGTATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGACAATTACGAACCAGGAGATGACCCAAGAAAATTGCGCCCTGGAGAAATTGACCCAAACCCAGAGTCAAAGCCTGCACGTCCTGACCCTGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGGTTAGCAAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCCAGAGAGAAACAACTTGAAGAGGCCAGGAGGCTTGCTTCGCTACAAAAAAGGAGAGAGCTAAAAGCTGCAGGGATTGATACTCGACAACGGAAGAGAAAGAGAAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAAAGGCCTCCTCCAGGATTTTTTGATGTTAGTGAGGAAGATAGACCAGTGGAACAGCCCAAATTTCCAACAACAATTGAAGAACTAGAAGGCAAAAGAAGGGTTGATGTAGAGGCTCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGACAAGATGCTCCATCAGCTGTACTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGAGGAAAAGATCTAAACTTATGCTGCCTGCACCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAAATGGGATATGCAAGTGATCTTCTAGCTGGTAATGAAGAGCTTGCAGAGGGAAGTGGTGCTACACGAGCTCTGCTTGCAAATTATGCACAGACACCACGACAAGGAATGACACCTTTTCGAACTCCCCAAAGGACGCCGGCTGGTAAGGGTGATGCTATAATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACTCCATTATTGGGAGGAGAGAATCCGGAGCTGCATCCTTCAGACTTTTCCGGGGTCACCCCAAGGAAAAAGGAGATTCAAACACCAAATCCTATGTTAACGCCCTCAGCAACTCCTGGTGGTGTTGGTCTCACTCCTCGAAGTGGCATGACACCAGCTAGGGATGCTTACTCATTTGGAATGACTCCAAAAGGAACGCCTATTAGAGATGAGTTACGTATCAATGAAGATATGGACGCACATGATAGTGCAAAACTTGAGTCTCAAAGACAAGCTGATTTGAGAAGGAATCTTAGCCTAGGATTAGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGACAAAGAAGAACCTGAGGAGATGATTGAAGAGGACATGTCTGACAGGATTGCTAGAGAACGAGCTGAGGAAGAAGCAAGGCGGCAGGCTTTGCTTAGGAAAAGATCAAAAGTACTACAAAGGGAGCTTCCTCGGCCTCCTACTGCTTCTTTGGAACTTATTAGAAATTCTTTGATGAGAGCTGATGGAGACAAGAGCTCATTTGTTCCGCCTACCCCTATTGAGCAGGCTGATGAAATGATAAGAAAGGAACTTCTTGCTTTGTTAGAGCATGATAATGCAAAGTACCCAATTGATGAAAAGGCTAGCAAGGAGAGAAAGAAAGGTTCAAAGCGCACTGGAAATGGACCTACTGCAGTCATCCCCACAATAGATGATTTTGAAGAAACTGTGATGGAAGAGCCACTAGTGGTAGCTGACGGTCTTTGCTCTTCTTTTATTATTTTTGCCCAAGTATATCTAATAAGTTCTATGAAGGCAGTAGTTTCTATTAGAACTGCTGAGGCTGGGCTGGTTTGGATGGTAGGGTGTCGTTGA 2037 44.48 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKRPPPGFFDVSEEDRPVEQPKFPTTIEELEGKRRVDVEAQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLAGNEELAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDELRINEDMDAHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARRQALLRKRSKVLQRELPRPPTASLELIRNSLMRADGDKSSFVPPTPIEQADEMIRKELLALLEHDNAKYPIDEKASKERKKGSKRTGNGPTAVIPTIDDFEETVMEEPLVVADGLCSSFIIFAQVYLISSMKAVVSIRTAEAGLVWMVGCR 678
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 17372716 17375310 - CaPI482276_06g010710.1 Cam06g1071 129371
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1071 678 MobiDBLite consensus disorder prediction 382 421 - -
Cam06g1071 678 MobiDBLite consensus disorder prediction 597 620 - -
Cam06g1071 678 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Cam06g1071 678 Coils Coil 167 187 - -
Cam06g1071 678 FunFam CDC5 cell division cycle 5-like 5 59 - -
Cam06g1071 678 Gene3D - 5 58 - -
Cam06g1071 678 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Cam06g1071 678 MobiDBLite consensus disorder prediction 597 612 - -
Cam06g1071 678 MobiDBLite consensus disorder prediction 213 234 - -
Cam06g1071 678 MobiDBLite consensus disorder prediction 157 176 - -
Cam06g1071 678 SMART sant 58 105 IPR001005 -
Cam06g1071 678 SMART sant 6 55 IPR001005 -
Cam06g1071 678 MobiDBLite consensus disorder prediction 400 414 - -
Cam06g1071 678 Pfam Myb-like DNA-binding domain 10 70 - -
Cam06g1071 678 CDD SANT 10 53 IPR001005 -
Cam06g1071 678 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Cam06g1071 678 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Cam06g1071 678 Pfam pre-mRNA splicing factor component 407 633 IPR021786 -
Cam06g1071 678 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Cam06g1071 678 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 634 IPR047242 GO:0000398(InterPro)|GO:0000398(PANTHER)|GO:0000974(PANTHER)|GO:0000974(InterPro)|GO:0005681(PANTHER)
Cam06g1071 678 Gene3D - 59 114 - -
Cam06g1071 678 CDD SANT_CDC5_II 55 106 IPR047240 -
Cam06g1071 678 FunFam CDC5 cell division cycle 5-like 60 120 - -
Cam06g1071 678 Coils Coil 514 534 - -
Cam06g1071 678 MobiDBLite consensus disorder prediction 110 150 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1071 Cam-Chr6:17372716 Cam10g0698 Cam-Chr10:11238789 1.30E-10 dispersed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52142 PF11831 Myb_Cef 2.60E-51 No_clan Cam TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1071 K12860 - csv:101205030 1197.57