Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam06g1071 | ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACCGAAGATGAGATCCTTAAAGCCGCGGTTATGAAATATGGCAAAAACCAATGGGCTCGAATTTCGTCGCTTCTTGTCCGGAAATCTGCTAAGCAGTGCAAGGCTCGCTGGTATGAGTGGCTTGACCCCTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTCGGGCGTACTCCATCCCAGTGTCTCGAGCGGTATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGACAATTACGAACCAGGAGATGACCCAAGAAAATTGCGCCCTGGAGAAATTGACCCAAACCCAGAGTCAAAGCCTGCACGTCCTGACCCTGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGGTTAGCAAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCCAGAGAGAAACAACTTGAAGAGGCCAGGAGGCTTGCTTCGCTACAAAAAAGGAGAGAGCTAAAAGCTGCAGGGATTGATACTCGACAACGGAAGAGAAAGAGAAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAAAGGCCTCCTCCAGGATTTTTTGATGTTAGTGAGGAAGATAGACCAGTGGAACAGCCCAAATTTCCAACAACAATTGAAGAACTAGAAGGCAAAAGAAGGGTTGATGTAGAGGCTCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGACAAGATGCTCCATCAGCTGTACTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGAGGAAAAGATCTAAACTTATGCTGCCTGCACCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAAATGGGATATGCAAGTGATCTTCTAGCTGGTAATGAAGAGCTTGCAGAGGGAAGTGGTGCTACACGAGCTCTGCTTGCAAATTATGCACAGACACCACGACAAGGAATGACACCTTTTCGAACTCCCCAAAGGACGCCGGCTGGTAAGGGTGATGCTATAATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACTCCATTATTGGGAGGAGAGAATCCGGAGCTGCATCCTTCAGACTTTTCCGGGGTCACCCCAAGGAAAAAGGAGATTCAAACACCAAATCCTATGTTAACGCCCTCAGCAACTCCTGGTGGTGTTGGTCTCACTCCTCGAAGTGGCATGACACCAGCTAGGGATGCTTACTCATTTGGAATGACTCCAAAAGGAACGCCTATTAGAGATGAGTTACGTATCAATGAAGATATGGACGCACATGATAGTGCAAAACTTGAGTCTCAAAGACAAGCTGATTTGAGAAGGAATCTTAGCCTAGGATTAGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGACAAAGAAGAACCTGAGGAGATGATTGAAGAGGACATGTCTGACAGGATTGCTAGAGAACGAGCTGAGGAAGAAGCAAGGCGGCAGGCTTTGCTTAGGAAAAGATCAAAAGTACTACAAAGGGAGCTTCCTCGGCCTCCTACTGCTTCTTTGGAACTTATTAGAAATTCTTTGATGAGAGCTGATGGAGACAAGAGCTCATTTGTTCCGCCTACCCCTATTGAGCAGGCTGATGAAATGATAAGAAAGGAACTTCTTGCTTTGTTAGAGCATGATAATGCAAAGTACCCAATTGATGAAAAGGCTAGCAAGGAGAGAAAGAAAGGTTCAAAGCGCACTGGAAATGGACCTACTGCAGTCATCCCCACAATAGATGATTTTGAAGAAACTGTGATGGAAGAGCCACTAGTGGTAGCTGACGGTCTTTGCTCTTCTTTTATTATTTTTGCCCAAGTATATCTAATAAGTTCTATGAAGGCAGTAGTTTCTATTAGAACTGCTGAGGCTGGGCTGGTTTGGATGGTAGGGTGTCGTTGA | 2037 | 44.48 | MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKRPPPGFFDVSEEDRPVEQPKFPTTIEELEGKRRVDVEAQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLAGNEELAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDELRINEDMDAHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARRQALLRKRSKVLQRELPRPPTASLELIRNSLMRADGDKSSFVPPTPIEQADEMIRKELLALLEHDNAKYPIDEKASKERKKGSKRTGNGPTAVIPTIDDFEETVMEEPLVVADGLCSSFIIFAQVYLISSMKAVVSIRTAEAGLVWMVGCR | 678 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 17372716 | 17375310 | - | CaPI482276_06g010710.1 | Cam06g1071 | 129371 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam06g1071 | 678 | MobiDBLite | consensus disorder prediction | 382 | 421 | - | - | |
Cam06g1071 | 678 | MobiDBLite | consensus disorder prediction | 597 | 620 | - | - | |
Cam06g1071 | 678 | SUPERFAMILY | Homeodomain-like | 33 | 106 | IPR009057 | - | |
Cam06g1071 | 678 | Coils | Coil | 167 | 187 | - | - | |
Cam06g1071 | 678 | FunFam | CDC5 cell division cycle 5-like | 5 | 59 | - | - | |
Cam06g1071 | 678 | Gene3D | - | 5 | 58 | - | - | |
Cam06g1071 | 678 | ProSiteProfiles | Myb-like domain profile. | 2 | 53 | IPR001005 | - | |
Cam06g1071 | 678 | MobiDBLite | consensus disorder prediction | 597 | 612 | - | - | |
Cam06g1071 | 678 | MobiDBLite | consensus disorder prediction | 213 | 234 | - | - | |
Cam06g1071 | 678 | MobiDBLite | consensus disorder prediction | 157 | 176 | - | - | |
Cam06g1071 | 678 | SMART | sant | 58 | 105 | IPR001005 | - | |
Cam06g1071 | 678 | SMART | sant | 6 | 55 | IPR001005 | - | |
Cam06g1071 | 678 | MobiDBLite | consensus disorder prediction | 400 | 414 | - | - | |
Cam06g1071 | 678 | Pfam | Myb-like DNA-binding domain | 10 | 70 | - | - | |
Cam06g1071 | 678 | CDD | SANT | 10 | 53 | IPR001005 | - | |
Cam06g1071 | 678 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 2 | 57 | IPR017930 | - | |
Cam06g1071 | 678 | ProSiteProfiles | Myb-like domain profile. | 54 | 103 | IPR001005 | - | |
Cam06g1071 | 678 | Pfam | pre-mRNA splicing factor component | 407 | 633 | IPR021786 | - | |
Cam06g1071 | 678 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 58 | 107 | IPR017930 | - | |
Cam06g1071 | 678 | PANTHER | CELL DIVISION CYCLE 5-LIKE PROTEIN | 1 | 634 | IPR047242 | GO:0000398(InterPro)|GO:0000398(PANTHER)|GO:0000974(PANTHER)|GO:0000974(InterPro)|GO:0005681(PANTHER) | |
Cam06g1071 | 678 | Gene3D | - | 59 | 114 | - | - | |
Cam06g1071 | 678 | CDD | SANT_CDC5_II | 55 | 106 | IPR047240 | - | |
Cam06g1071 | 678 | FunFam | CDC5 cell division cycle 5-like | 60 | 120 | - | - | |
Cam06g1071 | 678 | Coils | Coil | 514 | 534 | - | - | |
Cam06g1071 | 678 | MobiDBLite | consensus disorder prediction | 110 | 150 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam06g1071 | Cam-Chr6:17372716 | Cam10g0698 | Cam-Chr10:11238789 | 1.30E-10 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52142 | PF11831 | Myb_Cef | 2.60E-51 | No_clan | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam06g1071 | K12860 | - | csv:101205030 | 1197.57 |