Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1136 ATGGGTTCACCAAAAACTGGACAACATGTGAGCTTTAATGCTCCGAGGCCATTTGGGCACAGGCTGAAATCGGATATGAAAGAGACGTTTTTCCCTGATGATCCGTTCAGACAGTTTCGAAATGAAAGAGACGCAATACAAAGAGTGAAAAAGGGGTTCCAATATTTCATACCCATATTGGAATGGTTTCCTAAATACAATTTGAATATGTTTAAGTATGATTTGCTTGCTGGTATTACCATTACCAGCCTTGCTATTCCTCAAGGCATTAGTTATGCCAAACTCGCCGTCCTCCCTCCCATTATCGGCCTCTATTCGAGCTTCGTTCCGCCGCTCGTGTATGCAGTGTTTGGAAGCTCAAAGCATCTGGCGGTGGGAACGGTGGCTGCATGTTCGTTGCTGATATCAGAAATTATTGGAGAAGTGGCTTCACCGGAAGAAGAACCCACATTGTATCTCCACTTGGTTTTCACCGCCACTTTTATCACCGGTATCATGCAGGCCGCATTAGGCTTTCTAAGATTGGGAATTTTGGTGGATTTCTTATCGCACTCAACAATCCTTGGGTTTATGGGAGGAACGGCTGTGATCATTTCCCTTCAACAACTAAAAGGCATATTTGGACTGACTCATTTCACCTCTAAAACTGACGTTTATTCCGTACTTCATGCCGTTTTCTCCCTTAGAAAAGAGTGGAAATGGCAAAGTGCTGTGGTGGGCATCGTTTTCCTTGTATTCCTCCAGTTTACTCGCTACTTAAGAAACAGAAACCCGAAGCTATTTTGGGTGTCAGCGATGGCTCCCATGGTGACTGTAATAATAGGGTGTTTGTTTGCATATTTCATCAATGGAACTCAGCATGGAATCTTAACTGTGGGTCATTTGAGCAAAGGAATAAACCCTCTTTCTATTCACTTCTTGAACTTTGACTCTAAATATTTATCAGCTGTGGTACAAGCTGGGTTGATCACTGGCCTTGTCGCTTTGGCGGAAGGAATAGCAATTGGTCGAAGCTTTGCAATTATGAAAAATGAACAAATCGATGGGAATAAGGAGATGATAGCTTTTGGTTTGATGAACATAGTGGGATCTTTCACTTCCTGCTACTTAACCACTGGGCCATTCTCAAAGACCGCAGTGAACTTCAATGCCGGGTGTAGGACAGCAATGTCAAACATAGTTATGGCAATCTTCATGGCGCTCACCCTCCTCTTTCTAGCTCCTCTCTTCAGCTACACACCTCTTGTAGCCCTTTCCGCCATTATCATGTCTGCCATGCTTGGTCTCATCAAATATGAAGAAATGTATCATCTTCTCAAAGTTGACAAATTCGATTTTTGCATTTGTATGGCGGCTTTCTTGGGTGTTGCCTTCTTAAGCATGGATGTTGGCATCATGCTTTCGGTGGGACTTGCTTTACTGAGAGCTCTTCTGTACATGGCTAGACCAGCTACTTGCAAGCTCGGGAAAATACCAAACTCCAGTTTGTACAGAGATGTGGAGCAGTATCCTAATGCAACTAGAGCCCATGGAATTATGGTTCTTCAACTTGGTTCCCCTATTTATTATGCCAACTCCAACTACATCAGAGAGAGGATTTTCAGATGGGTTCGTGATGAGCTAGTCGACTCCAAAGATGGATCCGTCGAACATGTACTCTTAGAGTTGAGCGGAGTTACCTCAATCGACATGACAGGGATTGAAACTCTAGTCGAAATCCATAGATCATTACAAGCAAACGGAATTCAGATGGGAATTGTAAACCCAAGAATTGTAGTGATGGAGAAGATGATTGCTTCGGAATTCACAGACACGATCGGGAAAGAGAACATCTATTTGTCGGTAGACGAAGGAGTGGAAAGGTGTAGAGATTTGGTTCCAAAATTAAAGAAAACAGAAACAAATGATCGAAGTTCGAACATGACGACAACAGAGCAACAAGTTTAA 1947 42.99 MGSPKTGQHVSFNAPRPFGHRLKSDMKETFFPDDPFRQFRNERDAIQRVKKGFQYFIPILEWFPKYNLNMFKYDLLAGITITSLAIPQGISYAKLAVLPPIIGLYSSFVPPLVYAVFGSSKHLAVGTVAACSLLISEIIGEVASPEEEPTLYLHLVFTATFITGIMQAALGFLRLGILVDFLSHSTILGFMGGTAVIISLQQLKGIFGLTHFTSKTDVYSVLHAVFSLRKEWKWQSAVVGIVFLVFLQFTRYLRNRNPKLFWVSAMAPMVTVIIGCLFAYFINGTQHGILTVGHLSKGINPLSIHFLNFDSKYLSAVVQAGLITGLVALAEGIAIGRSFAIMKNEQIDGNKEMIAFGLMNIVGSFTSCYLTTGPFSKTAVNFNAGCRTAMSNIVMAIFMALTLLFLAPLFSYTPLVALSAIIMSAMLGLIKYEEMYHLLKVDKFDFCICMAAFLGVAFLSMDVGIMLSVGLALLRALLYMARPATCKLGKIPNSSLYRDVEQYPNATRAHGIMVLQLGSPIYYANSNYIRERIFRWVRDELVDSKDGSVEHVLLELSGVTSIDMTGIETLVEIHRSLQANGIQMGIVNPRIVVMEKMIASEFTDTIGKENIYLSVDEGVERCRDLVPKLKKTETNDRSSNMTTTEQQV 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21621796 21624983 + CaPI482276_06g011360.1 Cam06g1136 129436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1136 648 CDD STAS_SulP_like_sulfate_transporter 503 615 - -
Cam06g1136 648 ProSiteProfiles STAS domain profile. 502 622 IPR002645 -
Cam06g1136 648 SUPERFAMILY SpoIIaa-like 505 623 IPR036513 -
Cam06g1136 648 Gene3D STAS domain 482 625 IPR036513 -
Cam06g1136 648 FunFam Sulfate transporter 31 482 624 - -
Cam06g1136 648 PANTHER SULFATE TRANSPORTER 43 623 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam06g1136 648 ProSitePatterns SLC26A transporters signature. 100 121 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Cam06g1136 648 Pfam Sulfate permease family 71 452 IPR011547 GO:0016020(InterPro)
Cam06g1136 648 Pfam STAS domain 503 617 IPR002645 -
Cam06g1136 648 NCBIfam sulfate permease 58 617 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0565 Cam-Chr5:5020315 Cam06g1136 Cam-Chr6:21621796 4.80E-201 dispersed
Cam06g1136 Cam-Chr6:21621796 Cam09g0713 Cam-Chr9:7098159 1.50E-202 dispersed
Cam06g1136 Cam-Chr6:21621796 Cam06g1137 Cam-Chr6:21672015 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1136 K17471 - csv:116402148 1161.36