Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1139 ATGAATCCTAAATCCCATTTCAACCCTCTTTTCCATTTCTCCCTCCTCCTCCTCCTCCTCCTCCTCCGCCTCTCCGCCGCCCTCCCCTCCGTCGGCCATGGCACTCTCTCCGACGCCGAAGCTCTCTTCATCCGCCACCGCCAGCTTCTTTACTACAGAGACGAGTGGGGTGACCGTGGGGAACAACTCACTGTCGACCCATCTCTTATTTTCGAAAATGAGAGAATTAGAAATGCTTACATTGCACTTCAAGCTTGGAAACTAGCCATTTTATCAGACCCTCTTAATCAAACCGCCAATTGGGTCGGATCTAATGTCTGCAGCTACTTCGGCGTTTTCTGTGCTCCCGCATTGGACAACCCCAAAATCCGTACCGTCGCCGGAATCGATCTCAACCACGGCGACATTGCCGGATACCTCCCTGAAGAGCTCGGTTTGCTTACCGATCTTGCATTGTTCCACATCAACTCTAACAGATTCTGCGGTACTTTACCCCACAAATTCGACCGTCTCAAGTTGCTTTACGAATTGGATCTCAGTAATAACCGCTTCGCCGGCAAGTTCCCCGACGTCGTTCTCAGGCTTCCGACGCTCAAGTTCTTGGATCTGAGGTTTAATGAATTTGAAGGGAATGTACCTAGAGAGCTGTTCGACAAGGATTTGGACGCTATTTTTATTAACCACAACAGGTTTAGATTCGAACTGCCGGATAATTTTGGGAACTCGCCGGTGTCGGTGATTGTGCTTGCGAACAATAAGTTCCATGGATGTGTGCCTTCGAGCTTGGGGAATATGACGAGGCTGAATGAGATTATTCTGATGAACAATGGGCTTAATTCTTGCTTGCCGCCGGAAATTGGGGCGTTGAAGAACTTGACGGTGTTTGATGTTAGTTCGAATGAGTTGGTGGGTCCGTTGCCGGAGAGTTTTGGAGGGCTTGTGAGTTTGGAGCAACTTAATGTGGCGAATAATTTTCTTTCTGGGAAGATTCCGGAGAGTATTTGTAAGTTGCCTAAGCTTCAGAACTTTACGTTCTCGAATAACTTCTTCTCCGGTGAGCCACCGGTATGTTTGAGGCTTCCGGATTTCAGTGATCGGAGGAATTGCTTGGCTGGAAGGCCCGGGCAGCGGTCGACTGGGCAATGTAGGACGTTCTTGTCGAGACCTGTTGATTGTAATGCGTTTAAATGCGGTGGTTCATCTTCTGGTTCGCCTTCTACTCCATTTACTCCGCCAGTGGTTTCGCCCTCTTCGCCTCCGTCACCGTCAGGGGCGCCGTCTCCTTCATCGCCGTCTCATTCTCCCAATGCACCATCGGCGCCACCGCTCTCGCCCCATTTTCCTCCTCTGTCGCCACAATCGCCACCGTCGCCGCCTTCTTCCCCATCTACGCCGTCGCAGCCGACGACACCGTCGTCGCCTTCTTCCCCATCGACGCCGTCACAGCCCTCGACACCGCCGTCGCCTTCTTCCCCATCGACGCCGTCACAGCCGTCGACACCGCCGTCGCCTTCTTCCCCATCGACGCCGTCACAGCCGTCGACACCGCCGTCGCCTTCTTCTCCATCTACCCCTTCAACTCCTTCCACCCCGCCCCATTTTCCCTCTCCATCGGCGCCGTCGCCTTCATCTCCGCCTCGAGGTCATGCTCCCCCGTCATTACCGTCACCTTCATCGCCCCCACAAGGCCATACTCCGCCGTCTGAGCCCTCACCATCATCACCACCCCACGGCCATACTCCGCCGGGTCCACCTTCGTCTGAGCCCTCGCCACCATCGCCGTCACAAGGTCACAATCCGTCGGCTCCTCCTATGTCCGAGCCCTCACCACCATTGCCGCCACAAGGTCACACTCCGCCGGCTCCTCCTTCGCCGTCCGAGCCGTCGCCTTCATCCCCGCCACATGTTAACACTCCGGCCATTCCCCCTTCGCCATCCGAGCCATCACCTTCCTCACCGCCTCAAGGCCATGTTCCTCCGGCGGAGCCTTCTCCTCCAGGAACATCATCACCACCAGCACCACCATTCCCAGTTTACACTCCGCCTCCGCCACAGTTCCCTGATTTCCCTTCGCCACCATCTACCCAACCTCCGGTCTACTGCCCACGATCCCCATATCCACCATCTCCTCCATCCTACTCCCCAAACCCACCTCTCAATCACCCCAACTCTCCGCCGCCGCCGCCGCTACCAGTTTATCCTCCCCCTCCCCCTGTTCATACAACCCCGTCGCCGCTTCCTCTTCCATGCATACAACCTCCCCCACCAAATGTTAAATATTCAGGACCGCCGCCCCCTCCACCAACACCTTCATCTCCAATTCACTATAATCCCCCACCACCGCCGGTCCATTACCAAGCTCCTCCCTCACCTTCACCACCGGTCAGGGTTTATCCGCCGCCGTCCCCAACTCCCCCACCTCCAGTGGTTTACGAAAGCCCGCCACCGCCAGTCGTCTACCAAAGCCCACCCCCGCCTCCAACTCCAGTATACGGAGGCCCACTGCCACCAATCTACGGAGTTCCGTACGCCTCTCCTCCACCACCACCCTTCTATTAA 2559 55.92 MNPKSHFNPLFHFSLLLLLLLLRLSAALPSVGHGTLSDAEALFIRHRQLLYYRDEWGDRGEQLTVDPSLIFENERIRNAYIALQAWKLAILSDPLNQTANWVGSNVCSYFGVFCAPALDNPKIRTVAGIDLNHGDIAGYLPEELGLLTDLALFHINSNRFCGTLPHKFDRLKLLYELDLSNNRFAGKFPDVVLRLPTLKFLDLRFNEFEGNVPRELFDKDLDAIFINHNRFRFELPDNFGNSPVSVIVLANNKFHGCVPSSLGNMTRLNEIILMNNGLNSCLPPEIGALKNLTVFDVSSNELVGPLPESFGGLVSLEQLNVANNFLSGKIPESICKLPKLQNFTFSNNFFSGEPPVCLRLPDFSDRRNCLAGRPGQRSTGQCRTFLSRPVDCNAFKCGGSSSGSPSTPFTPPVVSPSSPPSPSGAPSPSSPSHSPNAPSAPPLSPHFPPLSPQSPPSPPSSPSTPSQPTTPSSPSSPSTPSQPSTPPSPSSPSTPSQPSTPPSPSSPSTPSQPSTPPSPSSPSTPSTPSTPPHFPSPSAPSPSSPPRGHAPPSLPSPSSPPQGHTPPSEPSPSSPPHGHTPPGPPSSEPSPPSPSQGHNPSAPPMSEPSPPLPPQGHTPPAPPSPSEPSPSSPPHVNTPAIPPSPSEPSPSSPPQGHVPPAEPSPPGTSSPPAPPFPVYTPPPPQFPDFPSPPSTQPPVYCPRSPYPPSPPSYSPNPPLNHPNSPPPPPLPVYPPPPPVHTTPSPLPLPCIQPPPPNVKYSGPPPPPPTPSSPIHYNPPPPPVHYQAPPSPSPPVRVYPPPSPTPPPPVVYESPPPPVVYQSPPPPPTPVYGGPLPPIYGVPYASPPPPPFY 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21748379 21750937 + CaPI482276_06g011390.1 Cam06g1139 129439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1139 852 MobiDBLite consensus disorder prediction 399 831 - -
Cam06g1139 852 Pfam Leucine Rich Repeat 174 191 IPR001611 GO:0005515(InterPro)
Cam06g1139 852 FunFam Leucine-rich repeat extensin-like protein 1 80 241 - -
Cam06g1139 852 Gene3D Ribonuclease Inhibitor 242 372 IPR032675 -
Cam06g1139 852 Gene3D Ribonuclease Inhibitor 79 241 IPR032675 -
Cam06g1139 852 FunFam Leucine-rich repeat extensin-like protein 5 242 381 - -
Cam06g1139 852 Pfam Leucine rich repeat 291 348 IPR001611 GO:0005515(InterPro)
Cam06g1139 852 MobiDBLite consensus disorder prediction 409 831 - -
Cam06g1139 852 SUPERFAMILY L domain-like 88 361 - -
Cam06g1139 852 Pfam Leucine rich repeat N-terminal domain 82 114 IPR013210 -
Cam06g1139 852 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 16 519 IPR051582 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0358 Cam-Chr6:5694669 Cam06g1139 Cam-Chr6:21748379 1.20E-38 dispersed
Cam06g0359 Cam-Chr6:5698386 Cam06g1139 Cam-Chr6:21748379 1.10E-38 dispersed
Cam06g1139 Cam-Chr6:21748379 Cam11g0208 Cam-Chr11:3621747 6.80E-14 dispersed
Cam05g0566 Cam-Chr5:5031096 Cam06g1139 Cam-Chr6:21748379 1.30E-36 transposed
Cam05g2147 Cam-Chr5:29892904 Cam06g1139 Cam-Chr6:21748379 4.40E-35 transposed
Cam07g0243 Cam-Chr7:3571961 Cam06g1139 Cam-Chr6:21748379 2.00E-32 transposed
Cam11g0299 Cam-Chr11:4501598 Cam06g1139 Cam-Chr6:21748379 4.90E-72 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1139 - - - 0.0